PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIT40088

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 333aa MW: 37620.8 Da PI: 8.8664

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT40088	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.4	2.7e-40	177	253	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq++gC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh l efD++krsCr+rLa+hn+rrrk+q+ OIT40088 177 CQADGCNADLTHAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHVLLEFDNGKRSCRKRLADHNRRRRKNQQ 253 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence
MHSLLAVNNF SLLKKIEVKK LREIMLDYER ETGEETTQET DQNDEFFDPF VNPHAHFSPI 60 RNHLDQQQQQ IQNLQFPQFQ TTPNNNHFSS LYNPHTYDET HRTSMVSLQP TGSAGFNMVL 120 PKSEPQFMGD IDFTNTSRIG LNLGGRTYFA SSEDDFVNRI FRRTRAVEDG SVNSPKCQAD 180 GCNADLTHAK HYHRRHKVCE FHSKAATVIA AGLTQRFCQQ CSRFHVLLEF DNGKRSCRKR 240 LADHNRRRRK NQQVINKKQP QLDSPLNSSS DKLNSKSPAE SGAHSSTVTV AISPPSNSMG 300 CFRQRTYQLA AAAADATTTT SSTSISSLFF SNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	2e-70	SBP family protein

Link Out ? help Back to Top
Ensembl	OIT40088