PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT40088
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 333aa    MW: 37620.8 Da    PI: 8.8664
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT40088genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.42.7e-40177253278
               -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
       SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
               Cq++gC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh l efD++krsCr+rLa+hn+rrrk+q+
  OIT40088 177 CQADGCNADLTHAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHVLLEFDNGKRSCRKRLADHNRRRRKNQQ 253
               **************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MHSLLAVNNF SLLKKIEVKK LREIMLDYER ETGEETTQET DQNDEFFDPF VNPHAHFSPI  60
RNHLDQQQQQ IQNLQFPQFQ TTPNNNHFSS LYNPHTYDET HRTSMVSLQP TGSAGFNMVL  120
PKSEPQFMGD IDFTNTSRIG LNLGGRTYFA SSEDDFVNRI FRRTRAVEDG SVNSPKCQAD  180
GCNADLTHAK HYHRRHKVCE FHSKAATVIA AGLTQRFCQQ CSRFHVLLEF DNGKRSCRKR  240
LADHNRRRRK NQQVINKKQP QLDSPLNSSS DKLNSKSPAE SGAHSSTVTV AISPPSNSMG  300
CFRQRTYQLA AAAADATTTT SSTSISSLFF SNG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-70SBP family protein