PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIT40032

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 361aa MW: 40417.2 Da PI: 5.8302

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT40032	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.5	1.8e-19	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd++++ G g+W++ ++ g++R++k+c++rw +yl OIT40032 15 KGPWTPEEDQKLVDYIHKNGHGNWRALPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP
2	Myb_DNA-binding	56.9	4.9e-18	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l OIT40032 68 RGKFSEDEEKLIVKLHSLLGNK-WSAIATRLP-GRTDNEIKNYWNTHL 113 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MGRSAEFDDM SGLKKGPWTP EEDQKLVDYI HKNGHGNWRA LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FSEDEEKLIV KLHSLLGNKW SAIATRLPGR TDNEIKNYWN THLRKKLLQI 120 GIDPVTHRPR TDHINLFNAL IGNLPPQLLA AITSNYININ NIDMNILTNF LFSDTAQLVH 180 QIQLLNNSSL LVNSLIRNAT TTTSPLNIEA LNQILGSQNQ IQEYNSTLMN NQEFLSSSSS 240 DSLIDFGLNS SNVHAEFTHA NNFSGKLDYQ EINDTKLGGD QLILSGTCST SSSVTGSENQ 300 TKNICKIPNE NTSDIYPKQE LIMQPSSAST STFEAWEQIM GDEEASDSYW TDIIDQASSS 360 P

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MGRSAEFDDM SGLKKGPWTP EEDQKLVDYI HKNGHGNWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSEDEEKLIV KLHSLLGNKW SAIATRLPGR TDNEIKNYWN THLRKKLLQI  120
GIDPVTHRPR TDHINLFNAL IGNLPPQLLA AITSNYININ NIDMNILTNF LFSDTAQLVH  180
QIQLLNNSSL LVNSLIRNAT TTTSPLNIEA LNQILGSQNQ IQEYNSTLMN NQEFLSSSSS  240
DSLIDFGLNS SNVHAEFTHA NNFSGKLDYQ EINDTKLGGD QLILSGTCST SSSVTGSENQ  300
TKNICKIPNE NTSDIYPKQE LIMQPSSAST STFEAWEQIM GDEEASDSYW TDIIDQASSS  360
P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	2e-81	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT40032