PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT39651

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 557aa MW: 60749.7 Da PI: 10.8633

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT39651	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	45.5	9.6e-15	13	49	5	41
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 + r+ ++ kR++g++KK ELS+LCd+e+a ii+s OIT39651 13 RDAERKASYKKRKKGLFKKVLELSTLCDVEIAAIIYS 49 567899******************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MARRKVRLAF IIRDAERKAS YKKRKKGLFK KVLELSTLCD VEIAAIIYSA FHSGAEVWPS 60 HEQVMGIIER FRALPEIEQS KRQVNVEGFT RQRIRKLEDQ LRKIRKENRI KEFTNLMYDL 120 LGGQEVPQNM HPYDLNDLTY VIDQNLQKVY ERMTEEAKKQ GFTFDVPLTG PISPPRGTNF 180 EEPRAPLAPP PVVPTTAPTS VIRPMASISM VRPMAPSMVR PFAASSYAPP LLVPPPPFVH 240 PASLSRALSP VAPPRMFRPV GLSIWPPAPV SQQIFRPMVA QMVSPMPRVV DTRSWATIVA 300 SSPMPPTVAP RSWAPRVAFP LPPAAAPRSW APSLASPMPP AAAPRSWAPL VASPMPPAAA 360 PRSWAPSVAS PIPPRSWAPS VASPMPPAAA PTPSVAFPMP PAAAPRSWAP SVASPMPPAA 420 PPRSWAPSLT SPLPPAAAPR SWAPRVASPM PPAVAPRSWA PGVASSLPLQ MAPAMSPRMD 480 FPMIPVLSAR TSSPMVPSVT PPMANSMNSS VDASMPVTNY QNYFYGNPPD WEEDALMAFV 540 NGTCNIFEEP NHHNNNF

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MARRKVRLAF IIRDAERKAS YKKRKKGLFK KVLELSTLCD VEIAAIIYSA FHSGAEVWPS  60
HEQVMGIIER FRALPEIEQS KRQVNVEGFT RQRIRKLEDQ LRKIRKENRI KEFTNLMYDL  120
LGGQEVPQNM HPYDLNDLTY VIDQNLQKVY ERMTEEAKKQ GFTFDVPLTG PISPPRGTNF  180
EEPRAPLAPP PVVPTTAPTS VIRPMASISM VRPMAPSMVR PFAASSYAPP LLVPPPPFVH  240
PASLSRALSP VAPPRMFRPV GLSIWPPAPV SQQIFRPMVA QMVSPMPRVV DTRSWATIVA  300
SSPMPPTVAP RSWAPRVAFP LPPAAAPRSW APSLASPMPP AAAPRSWAPL VASPMPPAAA  360
PRSWAPSVAS PIPPRSWAPS VASPMPPAAA PTPSVAFPMP PAAAPRSWAP SVASPMPPAA  420
PPRSWAPSLT SPLPPAAAPR SWAPRVASPM PPAVAPRSWA PGVASSLPLQ MAPAMSPRMD  480
FPMIPVLSAR TSSPMVPSVT PPMANSMNSS VDASMPVTNY QNYFYGNPPD WEEDALMAFV  540
NGTCNIFEEP NHHNNNF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	25	RRKVRLAFIIRDAERKASYKKRK
2	22	26	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	2e-34	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	OIT39651