PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT39614

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GeBP

Protein Properties

Length: 410aa MW: 44753 Da PI: 5.0691

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT39614	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	112.7	2.3e-35	90	192	1	97
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgk......spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 klfqrlw++eDei lLqG++d+++++g + + d++afy+++k++ +++++k+qlveK+rrLKkK+++ ++k+ sgke++f+++hd+ +fe+s+ki OIT39614 90 KLFQRLWTDEDEIELLQGFLDYTTQRGLnnsstpQHHYDTTAFYDQIKSKFQLDFNKNQLVEKLRRLKKKYRTVMSKMGSGKEFVFKSAHDHATFEISRKI 190 579**********************98766444455************************************************************* PP DUF573 96 Wg 97 W OIT39614 191 WT 192 *6 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MASLDHHQHQ PVYNDDNLDD DVDVDGDDDS TSSPSLAGEV TIAVSGVGVS TSDSLALYPD 60 LKRRRLDDFT IPVILPEKKP SATFDDSQRK LFQRLWTDED EIELLQGFLD YTTQRGLNNS 120 STPQHHYDTT AFYDQIKSKF QLDFNKNQLV EKLRRLKKKY RTVMSKMGSG KEFVFKSAHD 180 HATFEISRKI WTNVGSAVRG GANGVSGAVV LYAPPEDGGL DDDDAHVNPN PYANDLIDHS 240 PKFNLNSNPN GIDIKTPRSR KRSPAASTEA VKVEQQPYQP SGGGSTTVPL AAAPVAEVAA 300 TATATATAAV AASIPSLIEE TVRNCVSPIF KELLNSVANL NGSSRGFGFG GMGISPIPLG 360 FGGGAMSMEM MGDEKWRKQQ MLELEVYSKR LELVQDQIKA QLEELRSMGS

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MASLDHHQHQ PVYNDDNLDD DVDVDGDDDS TSSPSLAGEV TIAVSGVGVS TSDSLALYPD  60
LKRRRLDDFT IPVILPEKKP SATFDDSQRK LFQRLWTDED EIELLQGFLD YTTQRGLNNS  120
STPQHHYDTT AFYDQIKSKF QLDFNKNQLV EKLRRLKKKY RTVMSKMGSG KEFVFKSAHD  180
HATFEISRKI WTNVGSAVRG GANGVSGAVV LYAPPEDGGL DDDDAHVNPN PYANDLIDHS  240
PKFNLNSNPN GIDIKTPRSR KRSPAASTEA VKVEQQPYQP SGGGSTTVPL AAAPVAEVAA  300
TATATATAAV AASIPSLIEE TVRNCVSPIF KELLNSVANL NGSSRGFGFG GMGISPIPLG  360
FGGGAMSMEM MGDEKWRKQQ MLELEVYSKR LELVQDQIKA QLEELRSMGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	62	66	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	2e-71	GeBP family protein

Link Out ? help Back to Top
Ensembl	OIT39614