PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT39519
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 279aa    MW: 31062.5 Da    PI: 8.7515
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT39519genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-05251273223
               EETTTTEEESSHHHHHHHHHH.T CS
   zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
               +Cp C+k F+++ +L+ H  + H
  OIT39519 251 VCPRCSKGFRDPVSLVEHVEReH 273
               7*****************99888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MGTPAFPNLG KHCFVDDCRQ IDFLPFTCDC CHQVFCLDHR SYNRHHCPKA NKNDVTVVVC  60
PLCAKGVRLI PDEDPNITWE SHVNTECDPS NYEKATKKRK CPVPGCREIL TFSNTIKCRE  120
CTVDHCLKHR FGPDHKCPGR KKPEAAFSFM NFRTGSRKDK PKKAPATSSS SWATNLFKAA  180
EAGMSKLSSE FSQMPQMGKE GISGTNRSGS GSGQVERFPQ CSLKFSSVAA LISHVQKVHE  240
KNGVMNLTVD VCPRCSKGFR DPVSLVEHVE REHRGTSKA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-119C2H2 family protein