PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT39516
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 394aa    MW: 45150.1 Da    PI: 4.8396
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT39516genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.63.4e-18858151
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              k+ie+ ++rqvtfskRr  ++KKAeE+ v Cd++v  + fs++g++  ++s
  OIT39516  8 KKIEEITKRQVTFSKRRSSLIKKAEEIAVCCDVDVFFVAFSPSGRISKFCS 58
              689*******************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    
MGRKIEMKKI EEITKRQVTF SKRRSSLIKK AEEIAVCCDV DVFFVAFSPS GRISKFCSQK  60
SIEDMIHRYI NLPVERRLTH LADVQNLELQ IKKSTLELQI LDATIRDYEP GVDQEPSLHQ  120
LYWCERNLQQ SLQKVMARKM NFDQMELEKQ GKLDTIPFHF AAQETDPQQL DTWINPYSAS  180
IQRNIFQFQD LTDRGKRVAE NSSNYAYNVP FASSSQCGNI SFPQIQNSSP YISTQSEQQN  240
MVVDVQQNPA QAFGQSEAQV TFGESSSSSI MNFWNNLCNS TRPIPGLPST MGTQLNNSSQ  300
LELDYAPPNW STLPYPSNIN FSSHNNNHII QNNDHYSSVQ SDARGPNGCN YALEANIMDN  360
NHYFVERTQE NDSWEWNDSV LNDTFSVENF SNLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.25e-13MIKC_MADS family protein