PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT39496
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 423aa    MW: 46492.8 Da    PI: 5.7659
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT39496genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.61.1e-38542062135
       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssaseceaesssss 81 
                g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG d++sk++eWLl++a p+i el+ +                     ++              
  OIT39496  54 SGGKDRHSKVWTSKGLRDRRVRLSVNTAIQFYDLQDRLGCDQPSKAVEWLLKAAAPSIAELPPLegfpdaqqlsdekrssagvepGF-------------- 140
               689*************************************************************96666655555443333222211.............. PP

       TCP  82 asnsssg.................kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                     +                 ++++++++s++s++s+ s l+l++ esr +ar ra+er  ek + k++
  OIT39496 141 ------DsadvemddddpndnqqqQQQQQQPCSSNSETSKGSGLSLSRsESRIRARGRAKERAVEKEKEKEN 206
               ......122222222222333333455555599999999999********************9999988865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    
MEIEEIQTQD CKFPRISYQD EEDDIGEVKK SSFGDIDKLY GWPTSRIVRV SRASGGKDRH  60
SKVWTSKGLR DRRVRLSVNT AIQFYDLQDR LGCDQPSKAV EWLLKAAAPS IAELPPLEGF  120
PDAQQLSDEK RSSAGVEPGF DSADVEMDDD DPNDNQQQQQ QQQQPCSSNS ETSKGSGLSL  180
SRSESRIRAR GRAKERAVEK EKEKENESDI VAHHHQNMHH SSSFTELLAG GMSNNNNNNN  240
NSNTRPIHQN TPRQWSTNPL EYFTSGLLGP SSTRAIDNST GFSGQVYLGN PLQPLIAVSS  300
PMFSISGDHQ PELQHFPFGG NNLVPVVTAN GGSNSQSNTS NEYNLNFSIS RGTLQSNSSS  360
TSPSILPHHF QRFSPIDGSQ SLFLGTTMAT TAAPNAAALY DAPLQLFYGN GYDHSDQKGK  420
GKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.14e-38TCP family protein