PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT39197
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 656aa    MW: 72120.6 Da    PI: 7.3832
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT39197genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.93.3e-2962145186
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               rW++qe+laL+++r+em+  +r+++lk+plWeevs+k+++ g++rs+k+Ckek+en+ k+++++k+g+ ++   + +t+++fdql 
  OIT39197  62 RWPRQETLALLRIRSEMDVVFRDSSLKGPLWEEVSRKLADLGYHRSAKKCKEKFENVYKYHRRTKDGRASK--ADGKTYRFFDQLA 145
               8********************************************************************96..66678******96 PP
2trihelix104.11.1e-32461546187
  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
               rW+k+e+ aLi++r++++ +++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea
  OIT39197 461 RWPKEEIEALIRLRTSLDLKYQDNGPKGPLWEEISAGMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLEA 546
               8*********************************************************************8.99***********85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    
MLGVSSGLMT TTSGGGGAAS ISAPPPQEAP ESGGSSEGGG GGDVAAAGGF SEEGERNSGG  60
NRWPRQETLA LLRIRSEMDV VFRDSSLKGP LWEEVSRKLA DLGYHRSAKK CKEKFENVYK  120
YHRRTKDGRA SKADGKTYRF FDQLAAFENT PSHTSLPPPP LAATPLTMAM PVRPNSSANP  180
PIPMSQNTFT VSHNNAAAPT VNHPLNASSL PLSQPPPPTQ PIITTLNQIN RPQGNTSSLL  240
SNSTSSSSTS SDEDIQKRHG KKRKWKDFFE RLTKDVIEKQ EELQNKFLET LEKRERERMV  300
REETWRVQEM TRMNREHDLL VQERSMAAAK DATIIAFLQK MTEQKNTPIP NITNASLAQI  360
QFQLSEKPQS APPHSQPQNQ TQQPKPAPAP APAPPAPAPA PATIPAPAPA TTPAPAIAVS  420
LPMTIHAQVQ TQAPSVPVAK TFEAPKTDNG GENLSPASSS RWPKEEIEAL IRLRTSLDLK  480
YQDNGPKGPL WEEISAGMRK LGYNRNAKRC KEKWENINKY FKKVKESNKK RPEDSKTCPY  540
FHQLEALYKE KAKNEVVPNT GTGFGLKPES NNPMVPIMAE PEQQWPFPSN QPQQQQQQQQ  600
QGIMSNIIQD HDNESDSMEE DDYDDDEDEG NAYEIVTNKQ PSSMAAATAT AATTAV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256264QKRHGKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.15e-59Trihelix family protein