PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT39194

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 583aa MW: 63538.1 Da PI: 9.1837

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT39194	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H OIT39194 74 FVCEVCNKGFQREQNLQLHRRGH 96 89*******************88 PP
2	zf-C2H2	15.1	6.8e-05	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+k + +s+ k H +t+ OIT39194 150 YKCEKCSKKYAVQSDWKAHTKTC 172 9********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence
MAAGPSSAVF LAMREEEQNQ QMKQQKQQQE LLIQQQPQQQ QAPQKKRRNQ PGTPNPDAEI 60 IALSPKTLMA TNRFVCEVCN KGFQREQNLQ LHRRGHNLPW KLKQKSTKEV KRKVYLCPEP 120 TCVHHDPSRA LGDLTGIKKH YSRKHGEKKY KCEKCSKKYA VQSDWKAHTK TCGTREYKCD 180 CGTLFSRRDS FITHRAFCDA LAQESARNPP SLSSIGSHLY GSSNNMSLGL SKMGSQISDH 240 SNSTDILHFG SSSNIKTSGQ FDHSNLMGTS IGASAFHPST SFFLPTDQTN HQDYAANKSS 300 IHGLMQLPDL HNNGNNNSSS SVASMFNLNF FQNSNNNSEN VGSHGNSNIS AGGGGLLLPS 360 HQFSNSSGDG SNNSSNMFSA GSLLGTDHHI SSSIPSLYGN HLNNNSSSAS PAPPMSATAL 420 LQKAAQMGST TSNNNMNNSS ASLLKAFGSS SSATKSDIHQ PPPVNFGSVV YGNPLSENHL 480 HDLVVNAYGS NDQNQQNDYG NNFEQQPPQK KQMINNFSME NMGTEQANRL TRDFLGVGEI 540 VRSMSGGFGS SHRDQQQMSS LDSKAAPPPQ SHHQSFGGAG NFQ

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence

MAAGPSSAVF LAMREEEQNQ QMKQQKQQQE LLIQQQPQQQ QAPQKKRRNQ PGTPNPDAEI  60
IALSPKTLMA TNRFVCEVCN KGFQREQNLQ LHRRGHNLPW KLKQKSTKEV KRKVYLCPEP  120
TCVHHDPSRA LGDLTGIKKH YSRKHGEKKY KCEKCSKKYA VQSDWKAHTK TCGTREYKCD  180
CGTLFSRRDS FITHRAFCDA LAQESARNPP SLSSIGSHLY GSSNNMSLGL SKMGSQISDH  240
SNSTDILHFG SSSNIKTSGQ FDHSNLMGTS IGASAFHPST SFFLPTDQTN HQDYAANKSS  300
IHGLMQLPDL HNNGNNNSSS SVASMFNLNF FQNSNNNSEN VGSHGNSNIS AGGGGLLLPS  360
HQFSNSSGDG SNNSSNMFSA GSLLGTDHHI SSSIPSLYGN HLNNNSSSAS PAPPMSATAL  420
LQKAAQMGST TSNNNMNNSS ASLLKAFGSS SSATKSDIHQ PPPVNFGSVV YGNPLSENHL  480
HDLVVNAYGS NDQNQQNDYG NNFEQQPPQK KQMINNFSME NMGTEQANRL TRDFLGVGEI  540
VRSMSGGFGS SHRDQQQMSS LDSKAAPPPQ SHHQSFGGAG NFQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-101	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT39194