PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIT39169

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 301aa MW: 33949.5 Da PI: 5.0757

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT39169	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.5	9.9e-16	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l+ +++ G g+W++ ++ g+ R++k+c++rw +yl OIT39169 16 KGPWTPAEDLKLISFIQKNGHGNWRSLPKQAGLLRCGKSCRLRWINYL 63 79****************************99**********97 PP
2	Myb_DNA-binding	53	7.7e-17	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+ +++++ lG++ W++Ia++++ gRt++++k+ w+++l OIT39169 69 RGNFTPEEENTIIKLHDSLGNR-WSKIASYLP-GRTDNEIKNVWNTHL 114 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MGKGRAPCCD KSKVKKGPWT PAEDLKLISF IQKNGHGNWR SLPKQAGLLR CGKSCRLRWI 60 NYLRPDVKRG NFTPEEENTI IKLHDSLGNR WSKIASYLPG RTDNEIKNVW NTHLKKRVGT 120 LNKDIKINTT TTQEEFETNN KDQYIDVATS LIEEATASAA GSCSPTSSYG SLNLCNLSTD 180 HVRAAEARDN QDQVINEIPS DSAGADIDFW DMLDTDLSPD LDYSKVLDMY SSNHSDQSQL 240 QAPHYTNESS SDQYDECQKW LRYLEIELGL TQTSTTTYTG ANYYECCDGF TSQDQNNTMQ 300 V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16490.1	1e-76	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT39169