PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT38905

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-X1

Protein Properties

Length: 874aa MW: 97598 Da PI: 8.4269

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT38905	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	18.1	5.9e-06	244	260	4	20
zf-NF-X1 4 HkCqklCHeGpCppCpq 20 H+C+++CHeG+CppC++ OIT38905 244 HRCSETCHEGNCPPCKA 260 ***************95 PP
2	zf-NF-X1	20.1	1.4e-06	294	313	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+HkC++ CHeG+C+ Cp+ OIT38905 294 CGRHKCERGCHEGDCGDCPL 313 ******************95 PP
3	zf-NF-X1	20.3	1.2e-06	401	420	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C+++C+ G+CppC++ OIT38905 401 CGRHACKRKCCDGDCPPCSE 420 ******************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 874 aa Download sequence
MTSWSATVAP PLSPPSSDSD SDSATTSDSH HHRHSDLSST IFKSYLEHSS GDHNNQQQQQ 60 HDLIKIQSFL TSSRSGALSC LICLERIRPS DPTWSCSSGC FAVFHLHCIQ SWGVQCSNLA 120 AARAVTRAAT PNDSSLLWHC PKCRVEYSKS QIPKNYYCFC GKLPDPPHDP WVLPHSCNEI 180 CGRPLKYNCG HHCLLLCHPG PCPACPKLVK SKCFCGAVED VKRCGFKNFS CNGVCKKLLD 240 CKTHRCSETC HEGNCPPCKA KGIYNCQCGK LEMKRECFDR FFRCENPCDK LLGCGRHKCE 300 RGCHEGDCGD CPLQGKRTCP CGKRVYEGIA CDAPVSVCGA TCGKMLSCGF HRCPERCHRG 360 PCIETCRVVV TKSCRCGSYR KQVPCYQDMT CERKCQKMRD CGRHACKRKC CDGDCPPCSE 420 MCDRKLRCRN HKCPAPCHRG ACAPCPVMVT ISCLCGVTHF EVPCGAEAEQ KPPKCRKPCR 480 VDRLCRHASN CKPHRCHYGA CPPCRLLCDE EYPCGHKCEL RCHGPTQPPL PEFTLKPKKR 540 RLTNQTELTP GSSCPPCPQL VWRSCWGNHV GAERMMVCSD RTVFSCDNLC GNPLPCGNHY 600 CTKVCHALVS STSKLYGSRR PESCEECTLP CQQERKPTCP HPCPLRCHPG ECPPCKALIK 660 RSCHCGSMVH VFECIYYNSL SAKEQLTVRS CGGPCHRKLP NCTHLCPEIC HPGECPSPDQ 720 CSKKVTARCG CQTLKKELVC KDVQAAYRSN GTDPKDVSRN QYGLGILPCN SDCRSKVKAA 780 EGELQHRKSK APEEKEPETK DNVTKRRRRK GRALEDKKTS TLQRIIAGIK RFLLFVIVII 840 ALIASVYLGY KGLLWVSDWM NEAEIQRQRR YSRT

Sequence ? help Back to Top

Protein Sequence Length: 874 aa Download sequence

MTSWSATVAP PLSPPSSDSD SDSATTSDSH HHRHSDLSST IFKSYLEHSS GDHNNQQQQQ  60
HDLIKIQSFL TSSRSGALSC LICLERIRPS DPTWSCSSGC FAVFHLHCIQ SWGVQCSNLA  120
AARAVTRAAT PNDSSLLWHC PKCRVEYSKS QIPKNYYCFC GKLPDPPHDP WVLPHSCNEI  180
CGRPLKYNCG HHCLLLCHPG PCPACPKLVK SKCFCGAVED VKRCGFKNFS CNGVCKKLLD  240
CKTHRCSETC HEGNCPPCKA KGIYNCQCGK LEMKRECFDR FFRCENPCDK LLGCGRHKCE  300
RGCHEGDCGD CPLQGKRTCP CGKRVYEGIA CDAPVSVCGA TCGKMLSCGF HRCPERCHRG  360
PCIETCRVVV TKSCRCGSYR KQVPCYQDMT CERKCQKMRD CGRHACKRKC CDGDCPPCSE  420
MCDRKLRCRN HKCPAPCHRG ACAPCPVMVT ISCLCGVTHF EVPCGAEAEQ KPPKCRKPCR  480
VDRLCRHASN CKPHRCHYGA CPPCRLLCDE EYPCGHKCEL RCHGPTQPPL PEFTLKPKKR  540
RLTNQTELTP GSSCPPCPQL VWRSCWGNHV GAERMMVCSD RTVFSCDNLC GNPLPCGNHY  600
CTKVCHALVS STSKLYGSRR PESCEECTLP CQQERKPTCP HPCPLRCHPG ECPPCKALIK  660
RSCHCGSMVH VFECIYYNSL SAKEQLTVRS CGGPCHRKLP NCTHLCPEIC HPGECPSPDQ  720
CSKKVTARCG CQTLKKELVC KDVQAAYRSN GTDPKDVSRN QYGLGILPCN SDCRSKVKAA  780
EGELQHRKSK APEEKEPETK DNVTKRRRRK GRALEDKKTS TLQRIIAGIK RFLLFVIVII  840
ALIASVYLGY KGLLWVSDWM NEAEIQRQRR YSRT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	535	541	LKPKKRR
2	805	810	KRRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein

Link Out ? help Back to Top
Ensembl	OIT38905