PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT38709

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 275aa MW: 31660.6 Da PI: 5.2433

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT38709	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.9	2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++q G g+W++ ++ g+ R++k+c++rw +yl OIT38709 14 KGPWTPEEDQILISFIQQNGHGNWRALPKLAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	50.8	3.8e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ +++++++lG++ W++Ia+++ gRt++++k+ w+++l OIT38709 67 RGNFTKEEEDTIIQLHEMLGNR-WSAIAAKLS-GRTDNEIKNVWHTHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
MGRAPCCEKM GLKKGPWTPE EDQILISFIQ QNGHGNWRAL PKLAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF TKEEEDTIIQ LHEMLGNRWS AIAAKLSGRT DNEIKNVWHT HLKKKLKDYK 120 PLQNSKRHPK NHDSKGPTTS ESSNNSDLTV INKQKHIDSP VPAPNSPQIS SSTEMSTVTL 180 VDDHQIVIKQ EEMESSEYFP EIDESFWTDE LTTDNNWCST DHVMVAADQE LQVQLPFSSL 240 KEENVDMLTT KTEDDMDFWY NVFIKTDDLP ELPEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	6e-91	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT38709