PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT38363 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 228aa MW: 26473.2 Da PI: 9.6562 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.4 | 7.7e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev viifsst klyeyss OIT38363 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTSKLYEYSS 59 8***********************************************96 PP | |||||||
2 | K-box | 85.2 | 1.4e-28 | 84 | 171 | 12 | 99 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ + +q+e+a L++++enLq+++R+++Ge+L+ L++k+Lq+Le+qLe sl+ +R +K+++l+++++el +k + ++en++L kkl+ OIT38363 84 SEVKFWQREAALLRQQLENLQENHRQMMGEELSGLNVKDLQNLEKQLEMSLRGVRMRKDQILIDEVQELTQKGNLSHQENMELYKKLD 171 67899********************************************************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
MGRGKIMIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TSKLYEYSST 60 SMKSVIERYN KAKEETHKLG DPISEVKFWQ REAALLRQQL ENLQENHRQM MGEELSGLNV 120 KDLQNLEKQL EMSLRGVRMR KDQILIDEVQ ELTQKGNLSH QENMELYKKL DLVRQENTEL 180 YKKVYGTRDA NAVSRNAMSS NSLRVNEDPH APLHLQLSQP QQQHYETP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 1e-90 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT38363 |