PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OIT38319 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 235aa MW: 26526.8 Da PI: 4.9811 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.6 | 3.7e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCda+va+iifsstgkl+eyss OIT38319 9 KKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYSS 59 68***********************************************96 PP | |||||||
2 | K-box | 53.1 | 1.4e-18 | 92 | 173 | 19 | 100 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++++L kei++ + +R++ Ge+L+ Ls++eLqqLe+ Le +l+++ ++K + ++++i++lq+k +l een++L+++++e OIT38319 92 SNYSRLSKEISEKSHRLRQMRGEELQGLSIEELQQLERSLEAGLTRVIERKGDKIMTEINQLQQKGMQLMEENERLKQQVME 173 6799***************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence |
MAREKIQIKK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEYSSS 60 SMKEILERRD LHSKNLEKLD QPSLELQLVE NSNYSRLSKE ISEKSHRLRQ MRGEELQGLS 120 IEELQQLERS LEAGLTRVIE RKGDKIMTEI NQLQQKGMQL MEENERLKQQ VMEISNNGYN 180 NPGAVLVAVE SENGYINEEG QSSESVTNAC NSTGPPPQDD DSSDTSLKLG LPYSG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-116 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | OIT38319 |