PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT38266

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 320aa MW: 36674.6 Da PI: 4.7071

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT38266	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.9	2.3e-13	28	73	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEd+ l++ vk++G+++W++I ++ + Rt+k+c++rw + OIT38266 28 KGPWKAEEDQVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 73 79***********************8887799********87 PP
2	Myb_DNA-binding	45.4	1.8e-14	84	123	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++++eE+ +++ +q+G++ W++Ia +++ gRt++++k++w OIT38266 84 KFSAEEETTVIELQAQYGNK-WARIATYLP-GRTDNDVKNFW 123 79****************.*****.********* PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MEGRRSSTSS SYNRSRYQFE DNEDEIKKGP WKAEEDQVLL NHVKKYGPRD WSSIRSKGLL 60 QRTGKSCRLR WVNKLRPNLK NGVKFSAEEE TTVIELQAQY GNKWARIATY LPGRTDNDVK 120 NFWSSRQKRL ARILRASAPQ PAKPQNNDNN NNNNDSQNDV FQDSPPIEAP KFSSSTDQEE 180 SLSKSQSCSS SYIDNSHNMI NMVPLAELVN PNSIAFESNL LQLDFTPNDE KLGIESSHIQ 240 TDFALPLENQ EFNMPNFIDV FGQFNGSELD NLQVPFVERS CCDNIVMREI DKPLTPDSFI 300 DDFPLDMFDH IEPLPSPSEW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	9e-72	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT38266