PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT38249
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 264aa    MW: 29568.1 Da    PI: 8.1224
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT38249genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-18115169256
               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               rk+ ++tkeq  +Le+ F+++++++ +++++LA++l+L  rqV vWFqNrRa+ k
  OIT38249 115 RKKLRLTKEQSAVLEDSFKEHSTLNSKQKRDLATRLSLRPRQVEVWFQNRRARTK 169
               788899***********************************************98 PP
2HD-ZIP_I/II119.81.4e-38115204191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+keq+++LE+sF+e+++L++++K +la++L l+prqv+vWFqnrRARtk+kq+E+d+e L+++y+ lk en+rL+ke +eL+ +l
     OIT38249 115 RKKLRLTKEQSAVLEDSFKEHSTLNSKQKRDLATRLSLRPRQVEVWFQNRRARTKLKQIEVDCEILRKCYEDLKGENRRLNKELQELK-SL 204
                  69*************************************************************************************9.44 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MMCNTRLSLS LLGSSGESTT PNEAIHQNNN KRKSNQDQEL DINPLPSLTL CLSSSAVNSS  60
VISAAASSFS NSSVKRERDA SFEEEVELHT NKVIISPKLD DVDQEQDEDH EFGTRKKLRL  120
TKEQSAVLED SFKEHSTLNS KQKRDLATRL SLRPRQVEVW FQNRRARTKL KQIEVDCEIL  180
RKCYEDLKGE NRRLNKELQE LKSLKMAAPF RVQLSAATLS MCPSCERTYG GGGDNSATKI  240
SFSIGDQKPN FYGSFANSSA TLLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114120TRKKLRL
2164172RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-58HD-ZIP family protein