PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT38004
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 365aa    MW: 41860.2 Da    PI: 9.9934
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT38004genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52.1e-15453148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                     r+rW +eEd ll  +vkq+G++ W++I+++mg  + R +k+c +rw +yl
         OIT38004  4 RQRWRPEEDALLGAYVKQYGPKEWNLISKRMGrtLDRDPKSCLERWKNYL 53
                     89**********************************************97 PP
2Myb_DNA-binding35.91.7e-1159103147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+ T+eE+ l + + +++G++ Wk+Ia++++ gRt+k +  +w  +
         OIT38004  59 KGSLTPEEQNLVISLQAKYGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103
                      6788******************.*********.*****999999766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    
MKERQRWRPE EDALLGAYVK QYGPKEWNLI SKRMGRTLDR DPKSCLERWK NYLKPGIKKG  60
SLTPEEQNLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKQ LQKSQKLKDY  120
ADQPSVSTVS GGGSPEGGVS GKYDHILETF AEKYVQPKIF AFQPPLPLPA INIMPNLEPP  180
PVLSLSPVAI NEPVNSTTIP PWMNSAANAS SSAPSPSVSL TLTPSEPVLR VHEPVQPEYG  240
LTSRFYPVQQ LGTLIQYCKE LEEGKQNWVQ HKKEATWRLN RLEQQLESEK ARKRREKMEE  300
IEAKMRCLRE EEIAFIGRME REYKDQLSAL QRDAEAKEAK LIEAWSNKQL KLAKLIEKQT  360
GCIRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292297RKRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.13e-57MYB family protein