PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OIT38000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 27808.4 Da PI: 7.1927 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.3e-18 | 9 | 54 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v q+G+++W++I+ ++ gR++k+c++rw + OIT38000 9 KGSWSPEEDAMLTKLVDQHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 54 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 55 | 1.9e-17 | 63 | 105 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed ++++a++ +G++ W+tIar ++ gRt++ +k++w++ OIT38000 63 PFTPSEDAIILQAHAVHGNR-WATIARLLP-GRTDNAIKNHWNST 105 89******************.*********.***********986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence |
MDGTSEKIKG SWSPEEDAML TKLVDQHGPR NWSLISTGIP GRSGKSCRLR WCNQLSPAVQ 60 HRPFTPSEDA IILQAHAVHG NRWATIARLL PGRTDNAIKN HWNSTLRRKR HAPEAPAAAT 120 MLMALDESRT GSSSESNSKR QCSRASQEQS SCGLDADDLG LNGPETSLTL SLPGGGLLQS 180 LAVDEGKVKD EVPPPINGDH KVKEEKCTVE MEETCLVTIM QRMIAHEVRC YIDKLRAQGG 240 LGIGLAFESD VPKQP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37260.1 | 2e-54 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | OIT38000 |