PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT37918

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 544aa MW: 59140.9 Da PI: 8.8172

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT37918	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	102	124	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OIT37918 102 FVCEICNKGFQRDQNLQLHRRGH 124 89*******************88 PP
2	zf-C2H2	12.6	0.00041	178	200	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ OIT37918 178 WKCEKCSKKYAVQSDWKAHSKTC 200 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence
MIKGFMNQQN QPVVVEENMS NLTSASGEAA SVSSCNRNDN NNNNNNNTAG GIYPPQYNFA 60 PTNQQIQAQH QIKKKRNQPG NPDPGAEVIA LSPKTLMATN RFVCEICNKG FQRDQNLQLH 120 RRGHNLPWKL KQRTSKEIRK KVYVCPEPSC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC 180 EKCSKKYAVQ SDWKAHSKTC GTKEYRCDCG TLFSRRDSFI THRAFCDALA EESARAITGN 240 PMLSSQTGSS SHMNLQFQQS QFNSHEFPAA FSLKKEQQTG GFNLRPEIPA WLMTCQPLAG 300 GGPGPGPLPP QPIDLSSSIF QPTRFDQDYS TPSHGQDLNP NPSPNFNSTG GLGSPHISAT 360 ALLQKAAQMG ATMSNKSSTV SAAATGPSPT MLMRPHQFHV SAAAVESVSN NTTDVGLNLS 420 SREDFTTGFF NSLASYGNKA ATVTAATVPV TGPLTSAPSP SPTSFIMTSF SSANTTGFEG 480 PNFEDEFGGI GILSSKKNND GNDDMTKDFL GLRPLSQSDI FNIAGLVNTT TNENQSQNHK 540 TWQS

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence

MIKGFMNQQN QPVVVEENMS NLTSASGEAA SVSSCNRNDN NNNNNNNTAG GIYPPQYNFA  60
PTNQQIQAQH QIKKKRNQPG NPDPGAEVIA LSPKTLMATN RFVCEICNKG FQRDQNLQLH  120
RRGHNLPWKL KQRTSKEIRK KVYVCPEPSC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC  180
EKCSKKYAVQ SDWKAHSKTC GTKEYRCDCG TLFSRRDSFI THRAFCDALA EESARAITGN  240
PMLSSQTGSS SHMNLQFQQS QFNSHEFPAA FSLKKEQQTG GFNLRPEIPA WLMTCQPLAG  300
GGPGPGPLPP QPIDLSSSIF QPTRFDQDYS TPSHGQDLNP NPSPNFNSTG GLGSPHISAT  360
ALLQKAAQMG ATMSNKSSTV SAAATGPSPT MLMRPHQFHV SAAAVESVSN NTTDVGLNLS  420
SREDFTTGFF NSLASYGNKA ATVTAATVPV TGPLTSAPSP SPTSFIMTSF SSANTTGFEG  480
PNFEDEFGGI GILSSKKNND GNDDMTKDFL GLRPLSQSDI FNIAGLVNTT TNENQSQNHK  540
TWQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	141	KLKQRTSKEIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-108	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT37918