PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT37832

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GeBP

Protein Properties

Length: 414aa MW: 46196.8 Da PI: 6.2672

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT37832	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	122.8	1.6e-38	177	274	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiWgs 98 lfqrlwse+Deiv+L+G+id+++k++++p++d++af+ef+kks++++vsk+ql +KirrLKkK++++ k +k +ke +fsk+h+qk++elskkiWg+ OIT37832 177 LFQRLWSEDDEIVILKGMIDYRSKKKSDPVADLSAFHEFIKKSLHVDVSKTQLQDKIRRLKKKYENNAGKeKKGKKERTFSKPHEQKTYELSKKIWGK 274 79****************************************************************99455667999***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MAKKHTEEEE ESGDEMEVSS PGNVDSESES ESESEPEPEP DKQSPPSKKP PLAAPKKPQP 60 PEDSSSSAEE SGSESESESE PEPLTQKPNP VTVKPLASKP MDDPKKSAPK PRSKPNATAK 120 PTSPPPAKSS AGAGAKRPVA VDDAETKESK RSKKTPKKEI ETPVNQKTPS EDVKRQLFQR 180 LWSEDDEIVI LKGMIDYRSK KKSDPVADLS AFHEFIKKSL HVDVSKTQLQ DKIRRLKKKY 240 ENNAGKEKKG KKERTFSKPH EQKTYELSKK IWGKEKTDNK GEKVEEVDRV VENGTTSKKE 300 QSKSEGQDNV VLEDAMKQNE EQGAEVVKRE KNVEVAAQNL SSVLCERSVA ELEKWLEENS 360 GLISIEKRNE MKEKLTSLKL AEFDLCFRRV DLITEQGKLV REAMGASGIT ILQK

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MAKKHTEEEE ESGDEMEVSS PGNVDSESES ESESEPEPEP DKQSPPSKKP PLAAPKKPQP  60
PEDSSSSAEE SGSESESESE PEPLTQKPNP VTVKPLASKP MDDPKKSAPK PRSKPNATAK  120
PTSPPPAKSS AGAGAKRPVA VDDAETKESK RSKKTPKKEI ETPVNQKTPS EDVKRQLFQR  180
LWSEDDEIVI LKGMIDYRSK KKSDPVADLS AFHEFIKKSL HVDVSKTQLQ DKIRRLKKKY  240
ENNAGKEKKG KKERTFSKPH EQKTYELSKK IWGKEKTDNK GEKVEEVDRV VENGTTSKKE  300
QSKSEGQDNV VLEDAMKQNE EQGAEVVKRE KNVEVAAQNL SSVLCERSVA ELEKWLEENS  360
GLISIEKRNE MKEKLTSLKL AEFDLCFRRV DLITEQGKLV REAMGASGIT ILQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	1e-22	GeBP family protein

Link Out ? help Back to Top
Ensembl	OIT37832