PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT37691
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 396aa    MW: 43468.4 Da    PI: 6.7946
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT37691genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.3e-10239287355
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR+ri +++  L+el+P +    +k   Ka +L + ++Y++sLq
  OIT37691 239 NSHSLAERVRRERISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 287
               58**************************....999*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    
MASKDNGDMR LQHRNGGDTS FNCPSSMPNV DPFSGSGWDP LLSLNQKESF KGSSVVGHNE  60
FANLPYQSSH FGHYPSDPNL VEMVPKIPAF GNESFSELVN TFPLQEQLRG GSCYPNYVKN  120
RGISTEGAFL KGPHSQEECQ ISGEGAVEAS PNGKRKISGN HSLSNVSKNV EGELQKAPSR  180
DNSDCSKEQD GKKHKTDQNN SSNLRSKEAG KQVKEDSDGG EPPKDNYVHI RAKRGQATNS  240
HSLAERVRRE RISERMRLLQ ELVPGCNKIT GKAVMLDEII NYVQSLQQQV EFLSMKLATV  300
NPELNFDIDR ILSKEMLHQQ TSNAVLLGLG PGMSSSLPFP GISHGSFTGM PGTTPPFHPL  360
PQNVWDNELQ SLLQMGFESN SSMNNMGPNG RSKLDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-62bHLH family protein