PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT37589

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MIKC_MADS

Protein Properties

Length: 262aa MW: 30171 Da PI: 5.7349

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT37589	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88	5.1e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr+g+lKK +ELSvLCda++ +iifs++gkl+eyss OIT37589 9 KRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSTKGKLFEYSS 59 79***********************************************96 PP
2	K-box	61.4	3.5e-21	82	167	11	96
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 + + +l+ e++k+k+ + nLq ++ +++G+dL+s +++eL++Le+qLe +++k+R++K el+ +q+e+l++ ek+l+++n+++ + OIT37589 82 QDNRVELYDEITKMKRDTLNLQLSLQKYKGDDLSSAQYEELNELEKQLEFAVNKVRARKLELMQQQMENLRRTEKMLEKDNQEMYQ 167 44566899*************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence
MGRGKIEVKR IENKTSRQVT FSKRRAGLLK KTHELSVLCD AQIGLIIFST KGKLFEYSSQ 60 PHSMSEIISR YLQTTGASIP VQDNRVELYD EITKMKRDTL NLQLSLQKYK GDDLSSAQYE 120 ELNELEKQLE FAVNKVRARK LELMQQQMEN LRRTEKMLEK DNQEMYQWLM SNQMYKQQSS 180 SVMEHNDDDQ NEEAITELNL MGEQPLLSQF SFFGEEQVQP SSSNVLQLAA ASTSTSAYRL 240 QPSHPNLQDS DLPGCSYAHL KD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23260.2	3e-64	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	OIT37589