PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIT37528

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 307aa MW: 34834.7 Da PI: 7.862

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT37528	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.5	2.3e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl OIT37528 14 RGPWSPEEDAKLKEFIEKYGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	36.3	1.3e-11	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd + + + G++ W+ Ia+ ++ gRt++++k++w++ OIT37528 69 GDFSDEEDRVICSLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 679****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence
MGRAPCCDKA NVKRGPWSPE EDAKLKEFIE KYGTGGNWIA LPQKAGLRRC GKSCRLRWLN 60 YLRPNIKHGD FSDEEDRVIC SLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMCL 120 KSPFFPTTNF QTPPTQPQTI FSYTTTRSLT GGLEHISSAQ PNLNMNFNFQ LGTNQYSYFQ 180 PCQDQSLMNP MQATCSSSDG SCNQMSYGKD IKQEEMGNFL QGQIPTTFEE TQKVTLDYGN 240 NSGRGNDHQL GTWADQKSNG YQSSQFQYDI EEVKELISSS SSGNGCNNSS FFFYNDENKT 300 NERGMYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	2e-78	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT37528