PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT37444

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 1683aa MW: 189093 Da PI: 4.9052

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT37444	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	5.1e-19	24	79	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++++ yps+++r+eL++klgLt+rq ++WF+ rR k+k+ OIT37444 24 PKRQMKTPFQLETLERVYAMETYPSEATRAELSEKLGLTDRQLQMWFCHRRLKDKN 79 69***************************************************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 1683 aa Download sequence
MDGGSEGEGN RNVNQSSSEG PKKPKRQMKT PFQLETLERV YAMETYPSEA TRAELSEKLG 60 LTDRQLQMWF CHRRLKDKNT SGGTEKKPRA GESGGRRNLT VSPREDLMVA EAASDRDSGS 120 ASRSGSGSGS SRFDNGDGMP TPPVRYYESP RRTMERRVIA CIEAQLGEPL REDGPILGVE 180 FDELPPGAFG TPIEMAERRD HYRHSYDSKL YGSYDAKQIN VGSARSLSPA LTSGHREPAE 240 PKIVSDKYGQ IAAPYLYDSP VDGPSKNLPI MQGNGHFVRE YGVEGQSINV MSQQSRQGRF 300 PSPQRDNEFV PSNEDMLQLD RKRKLSEEAR IGKEVQANEK RIRKELEKQD LLRRKREEQM 360 KKEMERQDRE RRKEEQRLMR EQQRKEERFQ REEKREMERR ERFLQKELLR VERKKQKEEL 420 RKEREAAKQK VAMERAMARR IAKESMELIE DERLELMDLA ASSKGLLSIA SLDYDTLQNL 480 ESFRESLCEF PPKSVQLKKP FSIQPWNASD DNVGNLLMAW RFCLNFADIL GLWPFTLDEF 540 LQAFHDYDSR LLAEIHIALL KLIIKDIEDV ARTPSGGPGT NQYSAVNPEG GHPQIVEGAY 600 LWGFDIRNWQ KHLTPLTWPE VLRQFALSAG FGPPLKKKRE RACLNDSDET KGCEDVVSTL 660 RSGSAAEKAV AIMQEKGFMS QRKSRHRLTP GTVKFAAYHV LALEGDKGLN VLDIAERIQK 720 SGLRDLSTSK TPEASISVAL SRDPILFERI APSTYNVRLA FRKDPADADA IISAAKEKIQ 780 RYANGFLSGQ NAEDEERDDD SEGEGDVAEG PEVDDLGTPY GANKNSEQCS ILDTCLVNGK 840 SKPSDEVAQQ IGVDVAGIEG SNPSQECSEI DESKAGQPWV QGLTEGEYSD LCVEERLNAL 900 VALIGIANEG NSIRVILEDR LDAANALKKQ MWAEAQLDKR RLKEETINKF TDSSFNAVVE 960 GSQSPLGFPN SKNQGTTPTT VVKDESAVVV DNVQNHFESI SAEKTLVAQE TFMGELAIQP 1020 SGSTAERSRM QLKSFIGHKA EEMYVYRSLP LGQDRRRNRY WLFVASGSSE DPGSGRIFVE 1080 SPHGCWRLID TEEAFDCLLA SLDARGVRES HLHIMLQKIE DPFKERVRRN MSYDDIIVQH 1140 GNKCKNESSA ASSSPASGAG ADSPSSTIYG MGSDTWETSS SFKIELGKNE EERKNAFKRY 1200 QGFQSWMWKE CLSSSILCAM RYGKKRCLPL LGICGHCLDS YPSDEGNCPS CNKMSGKVDM 1260 NAEFPEQAMD SMDNLKIDYN KLAVSNACPL RVRLMKALLS FLEVYVPCEA LQSSWTEDRR 1320 KTWGMKLQNS LSPEDLLQIL TQLEGVIKRD YLSADYETAE ELMGLCALSI NAACESTFPG 1380 SVPQLPWMPQ TTGAVALRLL ELDASISYDP QQKTEAELKN KVDSLPNPSL GYASMKDLQK 1440 VEPTEVDRDG LLREENWDYL SSMPSSSRSR QVVRGRGGGR PRGRLQKGSA SKIPESGRAG 1500 VRPIETLTQV LIKQGETHGQ RHVRGRRTVR KRRIEKKIVE EIQPDYLGDK GSRLTFVVPP 1560 KKHGREEFDM NVEGIEATND DSNSMEAADS DDCAPENTYE FNRSDLMEMS DEDQDGFAGD 1620 GNDDDNDDDD DDDDPDNDND DRYRSHGQNM ERYGHMVEDD SDRDGDVNED QESDSSESGD 1680 YSD

Sequence ? help Back to Top

Protein Sequence Length: 1683 aa Download sequence

MDGGSEGEGN RNVNQSSSEG PKKPKRQMKT PFQLETLERV YAMETYPSEA TRAELSEKLG  60
LTDRQLQMWF CHRRLKDKNT SGGTEKKPRA GESGGRRNLT VSPREDLMVA EAASDRDSGS  120
ASRSGSGSGS SRFDNGDGMP TPPVRYYESP RRTMERRVIA CIEAQLGEPL REDGPILGVE  180
FDELPPGAFG TPIEMAERRD HYRHSYDSKL YGSYDAKQIN VGSARSLSPA LTSGHREPAE  240
PKIVSDKYGQ IAAPYLYDSP VDGPSKNLPI MQGNGHFVRE YGVEGQSINV MSQQSRQGRF  300
PSPQRDNEFV PSNEDMLQLD RKRKLSEEAR IGKEVQANEK RIRKELEKQD LLRRKREEQM  360
KKEMERQDRE RRKEEQRLMR EQQRKEERFQ REEKREMERR ERFLQKELLR VERKKQKEEL  420
RKEREAAKQK VAMERAMARR IAKESMELIE DERLELMDLA ASSKGLLSIA SLDYDTLQNL  480
ESFRESLCEF PPKSVQLKKP FSIQPWNASD DNVGNLLMAW RFCLNFADIL GLWPFTLDEF  540
LQAFHDYDSR LLAEIHIALL KLIIKDIEDV ARTPSGGPGT NQYSAVNPEG GHPQIVEGAY  600
LWGFDIRNWQ KHLTPLTWPE VLRQFALSAG FGPPLKKKRE RACLNDSDET KGCEDVVSTL  660
RSGSAAEKAV AIMQEKGFMS QRKSRHRLTP GTVKFAAYHV LALEGDKGLN VLDIAERIQK  720
SGLRDLSTSK TPEASISVAL SRDPILFERI APSTYNVRLA FRKDPADADA IISAAKEKIQ  780
RYANGFLSGQ NAEDEERDDD SEGEGDVAEG PEVDDLGTPY GANKNSEQCS ILDTCLVNGK  840
SKPSDEVAQQ IGVDVAGIEG SNPSQECSEI DESKAGQPWV QGLTEGEYSD LCVEERLNAL  900
VALIGIANEG NSIRVILEDR LDAANALKKQ MWAEAQLDKR RLKEETINKF TDSSFNAVVE  960
GSQSPLGFPN SKNQGTTPTT VVKDESAVVV DNVQNHFESI SAEKTLVAQE TFMGELAIQP  1020
SGSTAERSRM QLKSFIGHKA EEMYVYRSLP LGQDRRRNRY WLFVASGSSE DPGSGRIFVE  1080
SPHGCWRLID TEEAFDCLLA SLDARGVRES HLHIMLQKIE DPFKERVRRN MSYDDIIVQH  1140
GNKCKNESSA ASSSPASGAG ADSPSSTIYG MGSDTWETSS SFKIELGKNE EERKNAFKRY  1200
QGFQSWMWKE CLSSSILCAM RYGKKRCLPL LGICGHCLDS YPSDEGNCPS CNKMSGKVDM  1260
NAEFPEQAMD SMDNLKIDYN KLAVSNACPL RVRLMKALLS FLEVYVPCEA LQSSWTEDRR  1320
KTWGMKLQNS LSPEDLLQIL TQLEGVIKRD YLSADYETAE ELMGLCALSI NAACESTFPG  1380
SVPQLPWMPQ TTGAVALRLL ELDASISYDP QQKTEAELKN KVDSLPNPSL GYASMKDLQK  1440
VEPTEVDRDG LLREENWDYL SSMPSSSRSR QVVRGRGGGR PRGRLQKGSA SKIPESGRAG  1500
VRPIETLTQV LIKQGETHGQ RHVRGRRTVR KRRIEKKIVE EIQPDYLGDK GSRLTFVVPP  1560
KKHGREEFDM NVEGIEATND DSNSMEAADS DDCAPENTYE FNRSDLMEMS DEDQDGFAGD  1620
GNDDDNDDDD DDDDPDNDND DRYRSHGQNM ERYGHMVEDD SDRDGDVNED QESDSSESGD  1680
YSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	HB-other family protein

Link Out ? help Back to Top
Ensembl	OIT37444