PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT37279

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 353aa MW: 38649.9 Da PI: 6.9714

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT37279	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.9	3.5e-08	93	117	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC+ f++ G C+y +C+FaHg OIT37279 93 YKTKLCCKFRA-GVCPYITNCNFAHG 117 9********.***********8 PP
2	zf-CCCH	18.7	3.1e-06	178	198	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f+ C+yGd+C+F H+ OIT37279 178 CKKFYTEEGCPYGDSCTFLHD 198 99999999************7 PP
3	zf-CCCH	44.3	3e-14	232	257	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg OIT37279 232 WKTRICNKWETTGYCPFGSKCHFAHG 257 8************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MDFMGEAGFA VGNMIQDSTT SSGGFGSWGP NFSDQAVWAT EDDYRDWNSN ETPSNSQNRS 60 GSEPPNKKSR NVQGLDPRDI VTSSSKAIGK MFYKTKLCCK FRAGVCPYIT NCNFAHGIEE 120 LRKPPPNWQD IVAAHESERG GGGGGVLAVE PREEHQIPIL TSPDLRVESQ RSAKGRHCKK 180 FYTEEGCPYG DSCTFLHDEQ SRARESVAIS VTPTVGGFGN NATGTTLKPS NWKTRICNKW 240 ETTGYCPFGS KCHFAHGVAE LNRFGGGPVE TEGKDSLSVP PDLKQGGSSF KTTESTVPST 300 ISALHTDVYH LGQGVQVQRP SSIVERPGQR LFQKWKGPDK ISKIYGDWID DIE

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MDFMGEAGFA VGNMIQDSTT SSGGFGSWGP NFSDQAVWAT EDDYRDWNSN ETPSNSQNRS  60
GSEPPNKKSR NVQGLDPRDI VTSSSKAIGK MFYKTKLCCK FRAGVCPYIT NCNFAHGIEE  120
LRKPPPNWQD IVAAHESERG GGGGGVLAVE PREEHQIPIL TSPDLRVESQ RSAKGRHCKK  180
FYTEEGCPYG DSCTFLHDEQ SRARESVAIS VTPTVGGFGN NATGTTLKPS NWKTRICNKW  240
ETTGYCPFGS KCHFAHGVAE LNRFGGGPVE TEGKDSLSVP PDLKQGGSSF KTTESTVPST  300
ISALHTDVYH LGQGVQVQRP SSIVERPGQR LFQKWKGPDK ISKIYGDWID DIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-120	C3H family protein

Link Out ? help Back to Top
Ensembl	OIT37279