PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT37157

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 391aa MW: 44841.5 Da PI: 6.0949

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT37157	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	73.6	3.4e-23	281	364	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+ev++L+ +r +++++ +g +k+ Weev++ ++++g+ r+pk+Ckekwen+nk+yk++ ++ k ++ ++cpyf++l+ OIT37157 281 RWPKSEVQDLVSIRIALDHKFLKG-AKGSVWEEVADGLAKKGYIRTPKKCKEKWENINKYYKRTIDSGKAC-LRNYRSCPYFRELD 364 8********************9.99*************************************997.456679***997 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MEILTDGDGH RSNDVTTFPD NNLTPFPVST NAVYSHPASV VPPPPEIDHL PVSPARKLRP 60 VRCGNGRSYV DMVDSSCDMD ETLMNCSSDL GGFFNQFSAQ NANTVIPREC GFEFSAVQQM 120 KSVFDAHCFN LISQARILEA EFSSSSDDSE SSEAIEERLN RKRKRETRKS LKLYLEDMVK 180 RLMDKQEQMH KQLIDMIEKK EHERIIREEG WKQQEIERAK RDEEVRAEET SRNLALISFL 240 ENLLGDEFQI PKSSEMSSRV KDEGEVHGQE ADVRSDPCNR RWPKSEVQDL VSIRIALDHK 300 FLKGAKGSVW EEVADGLAKK GYIRTPKKCK EKWENINKYY KRTIDSGKAC LRNYRSCPYF 360 RELDILYKSH LLTQGTGDCV KSEAESKKAE E

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MEILTDGDGH RSNDVTTFPD NNLTPFPVST NAVYSHPASV VPPPPEIDHL PVSPARKLRP  60
VRCGNGRSYV DMVDSSCDMD ETLMNCSSDL GGFFNQFSAQ NANTVIPREC GFEFSAVQQM  120
KSVFDAHCFN LISQARILEA EFSSSSDDSE SSEAIEERLN RKRKRETRKS LKLYLEDMVK  180
RLMDKQEQMH KQLIDMIEKK EHERIIREEG WKQQEIERAK RDEEVRAEET SRNLALISFL  240
ENLLGDEFQI PKSSEMSSRV KDEGEVHGQE ADVRSDPCNR RWPKSEVQDL VSIRIALDHK  300
FLKGAKGSVW EEVADGLAKK GYIRTPKKCK EKWENINKYY KRTIDSGKAC LRNYRSCPYF  360
RELDILYKSH LLTQGTGDCV KSEAESKKAE E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47660.1	4e-44	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OIT37157