PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT36880
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 285aa    MW: 32107.7 Da    PI: 7.3869
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT36880genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-121663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W+++Ed++l+ ++  +G g+W++ +   g+ R +k+c++rw +yl
         OIT36880 16 RGLWSPDEDQKLKGYILTYGHGCWSSMPINAGLQRNGKSCRLRWINYL 63
                     788*******************************************97 PP
2Myb_DNA-binding52.31.3e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg + teE++ ++ ++ +lG++ W+ Ia++++ gRt++++k++w++yl
         OIT36880  69 RGTFNTEEEDTILTLHGMLGNK-WSQIAQHLP-GRTDNEIKNHWHSYL 114
                      899*******************.*********.************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MGCKQLVEKP KQKHKRGLWS PDEDQKLKGY ILTYGHGCWS SMPINAGLQR NGKSCRLRWI  60
NYLRPGLKRG TFNTEEEDTI LTLHGMLGNK WSQIAQHLPG RTDNEIKNHW HSYLKKRVAK  120
IAKDEAGQAT SGCTSLHIGN RESSPSSIKF ASQNSSPHSF EHIEGSFADS GQSASLQVDF  180
ARENCKSNLP KVLFSEWFSL EQFSGQEDFK NTTNQDLSKN NFGCNDSVFP DAFMQYVPLM  240
NEVTYGNHIN QDFHSGTLDG ISQNHSANGF EEFISGEFNI HGNVM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.19e-64MYB family protein