PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT36795

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 646aa MW: 74353 Da PI: 7.2703

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT36795	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.6	1.3e-20	41	134	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak+ GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w++t +++ HnHel OIT36795 41 EFYCSFAKQSGFSIRRHRTRGKdGIGRGITRRDFTCHRGGYPQLKPSEDGKLQRNRKSSRCGCQAFMRIVKRAdfnVPEWRITGFSNVHNHELL 134 6*************999877456677****************9***************98887676789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence
SQDDIGTVEE MPEDTILSRQ TSVNLVPFIG QRFVSQDAAY EFYCSFAKQS GFSIRRHRTR 60 GKDGIGRGIT RRDFTCHRGG YPQLKPSEDG KLQRNRKSSR CGCQAFMRIV KRADFNVPEW 120 RITGFSNVHN HELLKSTEVQ LLPAYCTMSP DDKSRICMFA KAGMSVRQML RFMELEKGVK 180 LGCLPFTEVD VRNLLQSFRN VEQDNDPIDL LKMCKEMKDR DPNLKYDYKI DCNNRLEHIA 240 WSYASSMRLY EAFGDSIVFD TTHRLDAYDM LLGIWIGVDN HGMHCFFGCV LIRDENLQSF 300 SWALKTFLGF MNGKAPGTIL TDQNLWLKEA IATEIPRAKH AFCIWHIISR FSDWFSTLLG 360 SQYDNWKVEF HRLYKLHSIE EYEVGWNEMV ETYKLDENKH IVSLYALRSY WALPFLRSYF 420 FAGMTSTFQS ETINTYIQRI LSVQSVLDNF VEQVARVVGA KDQAGGTHKA QRNVQKVPLK 480 TGSPIESHAA TVLTPYAFSK LQEELVLAPQ YASLMVDESY FIVRHHTEMD GDYKVLWVPH 540 EEFISCSCHN FEFTGILCRH VLRVLSTNNC FHIPDQYLPM RWRECSSSLA KPALFSLPSD 600 NTGKIQLLQS MISTLITESE ERLNVVCEEV STVLSRIKGL PTTSNG

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence

SQDDIGTVEE MPEDTILSRQ TSVNLVPFIG QRFVSQDAAY EFYCSFAKQS GFSIRRHRTR  60
GKDGIGRGIT RRDFTCHRGG YPQLKPSEDG KLQRNRKSSR CGCQAFMRIV KRADFNVPEW  120
RITGFSNVHN HELLKSTEVQ LLPAYCTMSP DDKSRICMFA KAGMSVRQML RFMELEKGVK  180
LGCLPFTEVD VRNLLQSFRN VEQDNDPIDL LKMCKEMKDR DPNLKYDYKI DCNNRLEHIA  240
WSYASSMRLY EAFGDSIVFD TTHRLDAYDM LLGIWIGVDN HGMHCFFGCV LIRDENLQSF  300
SWALKTFLGF MNGKAPGTIL TDQNLWLKEA IATEIPRAKH AFCIWHIISR FSDWFSTLLG  360
SQYDNWKVEF HRLYKLHSIE EYEVGWNEMV ETYKLDENKH IVSLYALRSY WALPFLRSYF  420
FAGMTSTFQS ETINTYIQRI LSVQSVLDNF VEQVARVVGA KDQAGGTHKA QRNVQKVPLK  480
TGSPIESHAA TVLTPYAFSK LQEELVLAPQ YASLMVDESY FIVRHHTEMD GDYKVLWVPH  540
EEFISCSCHN FEFTGILCRH VLRVLSTNNC FHIPDQYLPM RWRECSSSLA KPALFSLPSD  600
NTGKIQLLQS MISTLITESE ERLNVVCEEV STVLSRIKGL PTTSNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OIT36795