PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT36725

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 320aa MW: 36009.8 Da PI: 10.315

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT36725	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.2	2.5e-14	55	145	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ +++L+e ++ +l+rg+l+ ++W+ev++++ + ++ r+ +qCk++++ l+k+yk +k++ ++ + + + t+p+f++l+ OIT36725 55 CWSEAATHTLVESWGSKYVELNRGNLRHQQWQEVADAVnalhgHTKKQYRTDIQCKNRIDTLKKKYKIEKARVSQSQGRYVPTWPFFSSLN 145 7***********************************999987778889*********************9999*******997 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MSDDDDHLAP PFSIKNSPSS SPSPPPCTDN KLLALPPPPA SVSARTPVFP AREDCWSEAA 60 THTLVESWGS KYVELNRGNL RHQQWQEVAD AVNALHGHTK KQYRTDIQCK NRIDTLKKKY 120 KIEKARVSQS QGRYVPTWPF FSSLNALIGV TYKVSPSPSP ETFIPRRRKS PSPSPATFTP 180 QWRSSPPLFG IPVGLRSKRP ATAMDYTVSR RNFSAMTAAA AAASEDSGEE DEEGSEKSSR 240 KRSGAEVVEG AGYRRIAEAI GRFGEIYERV EKAKQRQMVE LEKQRMQFAK DLEIQRMKLI 300 MESQLHLQKL KRSKPHFTSR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	169	PRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	5e-64	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OIT36725