PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT36623
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 265aa    MW: 28831.9 Da    PI: 8.2307
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT36623genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.42.6e-20143177135
      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
               C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  OIT36623 143 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 177
               ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MMHRCSSSCH GSMVGPCSCG LFHSQSNVTT TTSSAFSMLF SHNPSAFDHE YSENMYSFAP  60
SSSSVDCTLS LGTPSTRLTN DISEKRVVQS HERRSSYMSN FCWDILQPKQ HTPSPPSSAH  120
KSTRGGSNGS NTNSTDPLVA RRCANCDTTS TPLWRNGPRG PKSLCNACGI RFKKEERRAS  180
AAAATANGGR GGGGGMDTQH MINSTASWVH HSQPPKMPCF SSAAYGNELR FIEDDDRDSD  240
ATAIPFLPWR LNVADRPSLV HDFTR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188195GGRGGGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.13e-55GATA family protein