PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT36546
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 547aa    MW: 61136.1 Da    PI: 5.5694
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT36546genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.25.4e-1371775471374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l+++L++cA+a+++++l  a++l+++l++ +s  g+p+qRl ay++e+L arla+s+s++yk+l+++e +   s+e +++++l++e++P++kf++l aN a
  OIT36546 177 LKQVLIACAKAIADNNLVTAEWLMSELRTVVSVCGSPIQRLGAYMLEGLVARLASSGSSIYKSLRCKEPT---SVELMSYMHLLYEICPYFKFGYLSANGA 274
               5799*****************************************************************9...9*************************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
               I++a+++e+++HiiDf+isqG QW++L++aLa+Rp+gpp++RiTg+++++s   +   +e +g+rL+++A++++vpfef++ va +++d+e+e+L+v++gE
  OIT36546 275 IVDAMKEENTIHIIDFQISQGSQWITLIHALAARPGGPPRIRITGIDDSTSAyaRGGGIEIVGRRLSSIAASCNVPFEFHP-VAASCSDVEIEHLKVRSGE 374
               ************************************************998899999************************.799**************** PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
                laVn++l lh+++desv ++++rd++L++vksl Pk+v++veqe+++n+ +F+ rfle+l+yy ++f+s+++ lpr++++ri+vE+++l+reivn++ace
  OIT36546 375 PLAVNFALILHHMPDESVGTQNHRDRLLRMVKSLTPKIVTLVEQESNTNRVQFFPRFLETLNYYLSIFESIDVALPRDHKQRINVEQHCLAREIVNIIACE 475
               ***************************************************************************************************** PP

      GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               gaer+erhe le+Wr+r+ +aGF+p+pls+++++++k+ll+++++  y+++e++g+l+lgW++r Lv+ +aW+
  OIT36546 476 GAERVERHELLERWRSRFLMAGFNPYPLSSSVNATIKTLLENYYQS-YTLDERNGALYLGWMKRDLVASCAWK 547
               ********************************************55.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    
MRPSQNAKDI NEFNRFYNQP VEDQESFFLP SINNPNNNQL LYADCGQQTQ FSALKHNQYC  60
YVESSTGNSS ELVSDSPPAD TFFADDNSMM HQGSDSCPSG MHHSPDDTYH SSGNSSCFTS  120
DGTGLKHKLK ELETAMLGPD SESLESYNTT PLAAANQISS ESGKWVDMME MMPNGDLKQV  180
LIACAKAIAD NNLVTAEWLM SELRTVVSVC GSPIQRLGAY MLEGLVARLA SSGSSIYKSL  240
RCKEPTSVEL MSYMHLLYEI CPYFKFGYLS ANGAIVDAMK EENTIHIIDF QISQGSQWIT  300
LIHALAARPG GPPRIRITGI DDSTSAYARG GGIEIVGRRL SSIAASCNVP FEFHPVAASC  360
SDVEIEHLKV RSGEPLAVNF ALILHHMPDE SVGTQNHRDR LLRMVKSLTP KIVTLVEQES  420
NTNRVQFFPR FLETLNYYLS IFESIDVALP RDHKQRINVE QHCLAREIVN IIACEGAERV  480
ERHELLERWR SRFLMAGFNP YPLSSSVNAT IKTLLENYYQ SYTLDERNGA LYLGWMKRDL  540
VASCAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein