PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT36439
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 835aa    MW: 92768.6 Da    PI: 6.6184
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT36439genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.61e-22133234199
               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
               f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++ ++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++el+v+
  OIT36439 133 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGELRVG 230
               99*****************************7333.34459************************************************..449999**** PP

               EE-S CS
        B3  96 vfrk 99 
               v+r+
  OIT36439 231 VRRA 234
               *996 PP
2Auxin_resp118.65.2e-39259341183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++tk++F+v+Y+Pr+s+++F+v++++++++ k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d dp rW++SkWr+Lk
    OIT36439 259 AWHAIQTKTMFTVYYKPRTSPADFIVPYDQYMESAKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDGDPKRWSESKWRCLK 341
                 89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    
MCTEMAASDS GRNAPGGAGK VDAERALYTE LWRACAGPLV TVPREGELVF YFPQGHIEQV  60
EASTNQVSDL QMPVYNLPSK ILCRVINVLL KAEPDTDEVY AQVTLMPEPN QDESAVTKEP  120
MPPSSPRFHV HSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMSRQPPT QELVAKDLHA  180
NEWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGENGELRVG VRRAMRQQVN  240
APSSVISSHS MHLGVLATAW HAIQTKTMFT VYYKPRTSPA DFIVPYDQYM ESAKNNYSIG  300
MRFKMRFEGE EAPEQRFTGT IVGIEDGDPK RWSESKWRCL KVRWDESCAI PRPDQVSPWK  360
IEPALSPPAL NPLPIPRPKR PRSNVLPSSP DSSVLTREGS SKITADPSQA NGFSRVLQGQ  420
EMSTLKGNFV ENNGSDASEK PIVWPPSLDD ARTDVHSASR RCLPDKWLPL GRPESSFTDL  480
LSGFGVQVSS SHRLHLPTGG KTSLPASLVK RQALDKENEF SLLGKQWSLA PSGLSLKLMD  540
SGLKGADSLY QMRETSRCSG FNEYPTLPGH RIDNQQGNWL MPQSVLPYIP MSTHSGEMMP  600
KPMASLQPEA VKPKEGNCKL FGIPLVSTSA SIDPIKLRNN SPIDSASNMD FGVHLHQFSA  660
TESDPWSEQS KGSKVLDDGI TVNDQEKQCQ TSHLGTRDRE GKGLTNSTRS CTKVHKHGTA  720
LGRSVDLAKF NNYEELIAEL DHLFYFNGEL KAQNKNWLVV YTDDEGDMML VGDDPWQEFC  780
GMVCKIFIYT KEEVQRMNPG TLNSKGEDNS SVAEGSDAKE VKDLHLPSES SPEDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein