PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT36189
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 321aa    MW: 36163.6 Da    PI: 5.5505
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT36189genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.84.6e-35121042103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y++++d++++ li w +++nsf+v+++ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+++ll++i 
      OIT36189  12 FVLKTYQMVNDPKIDGLIAWGRENNSFIVVEPLDFSQRILPIYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQTHLLKNIV 99 
                   9********************999*****************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
      OIT36189 100 RRKHS 104
                   *9976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MEANSNNIVA PFVLKTYQMV NDPKIDGLIA WGRENNSFIV VEPLDFSQRI LPIYFKHNNF  60
SSFVRQLNTY GFRKVDPDKW EFANEWFLRG QTHLLKNIVR RKHSRNSYCL KQDESEDEEI  120
YTEIARLKQE QKTLEQEVEN MTKRLEATEK RPQQMMAFLC KVVDDPEILP RILLEKERSK  180
RVSLNNSEKK RRIMISNNST SCSSVKSEEE VGDPLIGAIS SFRSPDANFD KDTLCQSSPS  240
SETPTTVWLS GRPMITYEPY RSCPAMSGSL SSGSSEGGGF TTAPSSEAFS GYDYGGRGGG  300
SVAAEEVSPP PYPFSLLGGG F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-90HSF family protein