PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT35882
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 385aa    MW: 42809 Da    PI: 8.696
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT35882genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.2e-09106155154
               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               r++ +  rE+ RRdr+N+ f eL   l +      +K++Ka+iL  +++ +k+L
  OIT35882 106 RKVQKADREKLRRDRLNEQFTELGNTLDPE----RPKNDKASILSDTIQVLKDL 155
               5677889********************997....69***************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    
VNGGILHRKC SAETKYCVCL TRVTPNICWK HNYSVTVTSL NSSPSISKFG RRCIIPISQS  60
QLRMDELKCQ TSYQSNHIPN PSVSDSTQLP PDSRPEAELK DSIAARKVQK ADREKLRRDR  120
LNEQFTELGN TLDPERPKND KASILSDTIQ VLKDLTAQVS KLKSEYAALT DESRELTQEK  180
TDLREEKASL KSDIESLNAQ YQQRLRTMYP WAGMDPSMVM HPPSYSYPVP VPIPTGAIPM  240
HPSLQPYPFF GNQNPAAIPN PCSPFVQYMA PSTLMEQQPA QQISPVMQPS NRTHGSGRHD  300
SRNKSSDQGE SRIEKYEDSN EVATNLELKT PGPASEQELS SGQRISRKLS SKDNSLTDGS  360
SSSRCSSSHS VQALSSNSLV RGKKT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.15e-89bHLH family protein