PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT35681

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 568aa MW: 63140.6 Da PI: 4.2619

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT35681	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48.8	8.7e-16	14	52	7	45
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 snr +s+R++g+lKKA+ELSvLCd+++ + +fs+ gk OIT35681 14 SNRIGVYSRRKKGLLKKANELSVLCDIDIFLAMFSPGGK 52 788889******************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence
MGRAKLKLHK LDGSNRIGVY SRRKKGLLKK ANELSVLCDI DIFLAMFSPG GKPSVYKSDN 60 SSFEDMITKF AEVNPEERAK SRKMECLDTI KKACKKSDHD VDIGQQLCPG DLTTEDITFL 120 SHSLRIRLSD IEGRVRLWKN LEKIDSIQQL RTMEDSISKS LNEIAKHKCG MGSLIFGAGQ 180 DFQPSSVRHG MDSPLNSDAR KEFHPCSSVH ACDSENIDVY EDMNSFDSSL HCDTGQDFQA 240 SSLMHHGMNL GQELYQCSSV HGENMDVYED LNSFPLEYLE EPSFSFESYT NLVCSKEIEV 300 SMPESVNFVP GEIFLDCEVN QEDIVTEFGF TFDVPQQEQT DDQGNDFDCS INKGSRLPHS 360 DLVNIHDSSK SASGTCENMI LAESLHFLYG MDSSSSDAGE EFSTSSSIKH GINLSSTQLD 420 AGLSVNGGDS ENMDNYKDLI AFDDSCLKFE DEQEFQSSSS IGQYSMNSPV SFDAGQELHR 480 SSSVNGGDSE SINGYEDLNL FVQGFLDDPP LSMESCTDLA GNHEVENYKP GYENCSEDKM 540 FLDCQLNQEN IEMAFKSNID FATGRANG

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence

MGRAKLKLHK LDGSNRIGVY SRRKKGLLKK ANELSVLCDI DIFLAMFSPG GKPSVYKSDN  60
SSFEDMITKF AEVNPEERAK SRKMECLDTI KKACKKSDHD VDIGQQLCPG DLTTEDITFL  120
SHSLRIRLSD IEGRVRLWKN LEKIDSIQQL RTMEDSISKS LNEIAKHKCG MGSLIFGAGQ  180
DFQPSSVRHG MDSPLNSDAR KEFHPCSSVH ACDSENIDVY EDMNSFDSSL HCDTGQDFQA  240
SSLMHHGMNL GQELYQCSSV HGENMDVYED LNSFPLEYLE EPSFSFESYT NLVCSKEIEV  300
SMPESVNFVP GEIFLDCEVN QEDIVTEFGF TFDVPQQEQT DDQGNDFDCS INKGSRLPHS  360
DLVNIHDSSK SASGTCENMI LAESLHFLYG MDSSSSDAGE EFSTSSSIKH GINLSSTQLD  420
AGLSVNGGDS ENMDNYKDLI AFDDSCLKFE DEQEFQSSSS IGQYSMNSPV SFDAGQELHR  480
SSSVNGGDSE SINGYEDLNL FVQGFLDDPP LSMESCTDLA GNHEVENYKP GYENCSEDKM  540
FLDCQLNQEN IEMAFKSNID FATGRANG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	2e-44	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	OIT35681