PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIT35647

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRF

Protein Properties

Length: 326aa MW: 37202.4 Da PI: 8.781

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT35647	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78	9.3e-25	73	116	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e OIT35647 73 DPEPGRCRRTDGKKWRCSKEAYADSKYCERHMHRGRNRSRKPVE 116 79***************************************997 PP
2	QLQ	62	1.6e-21	9	43	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FTa+Q+q+L++Q+l+yKy+a+++PvPp+Ll i+ OIT35647 9 PFTATQWQELEHQALIYKYMASGMPVPPDLLYSIR 43 9******************************9887 PP

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence
MSRARSGYPF TATQWQELEH QALIYKYMAS GMPVPPDLLY SIRRSLDSSN LFLHQPQHIG 60 WNCIQLGFGK KIDPEPGRCR RTDGKKWRCS KEAYADSKYC ERHMHRGRNR SRKPVEVMTT 120 RTTTTTTMPP TAIPISSIKN NSNNYSPSIP TSFSYSSQPQ HSFLYPHSSS STPPGNIGLS 180 SQDQTKFLFD SGAYSRSASG STSIDDSSWE LAPLTMGSPL GHSKQRTYSV SQIGESYLQL 240 QSFNESSKQQ RQDQYNYYEL GNEVKADMHM KIETEDHQQP KKVMHHFFDE LPPHQHNKDL 300 WLDSNTHLSI SVPDSSHDFF ITHNGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-55	GRF family protein

Link Out ? help Back to Top
Ensembl	OIT35647