PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT35568
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HB-other
Protein Properties Length: 343aa    MW: 38916.6 Da    PI: 4.7863
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT35568genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.14.1e-10279326653
               S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
  Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
               +++k qle+Le+++++++ p+ +++  + + ++L+ ++V  WF  rR 
  OIT35568 279 RIKKVQLETLEQVYRRSKRPTNAMISSIVHVTNLPRKRVLKWFEDRRS 326
               68899******************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MASASTTLRI SITLRCSTND HHLLVGQPRN RSNVALPLHS SSSRPSSSVL TFSRRRSNSA  60
NSAITSSKKK NKSSPKKDTE EDGDIDEDAF EALFQLLEED LKNDDLSLND DDISEEDLAK  120
LERELEEALK DDELLGEIAL IANEKIESED EDEDEDEEVV ADDDNEDDKD EELPVKLKNW  180
QLKKLGYALR KGRRKTNIKN LAAELCLDRA VVLELLRNPP PNLLLLSDAL PDEPVPRMIE  240
PESKPQETVS IEISDVARPV AKVETPVHVM QSSWSAQKRI KKVQLETLEQ VYRRSKRPTN  300
AMISSIVHVT NLPRKRVLKW FEDRRSEEGV PDHRRPYQPS SKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11270.16e-56HB-other family protein