PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT35178
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 505aa    MW: 55883.6 Da    PI: 4.9701
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT35178genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS335.41e-1021204991374
      GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar.svselykal.ppsetseknsseelaalklfsevsPilkfshl 96 
               lv+lL+++Aea++  +++  la+ +L rl+elasp+g ++m+Rlaa+ft AL+a l +  + +l k++ +p+ ++e+++ ++laa++l++++sP++kf+h+
  OIT35178 120 LVHLLMAAAEALTGVNKSreLARVILVRLKELASPNGsTNMERLAAHFTDALQALLDGaASGSLPKSMfSPNYKDEQQQGDVLAAFQLLQDISPFIKFGHF 220
               68***********85554449****************99*****************9964445556555888999999*********************** PP

      GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
               taNqaIleav++++rvHi+D+di++G+QW++L+qaL sR++gpp  +lRiT+++++ sg  s  +++etg+rL+ fA++ g pf+f+    ++ e++++++
  OIT35178 221 TANQAILEAVAHDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPtpHLRITALSRSGSGrrSFGTVQETGRRLTAFAASSGQPFSFHHCRLDTDETFKPSA 321
               ****************************************776556*********888899999************************9999********* PP

      GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
               L++ +gEa+++n++l+l ++  +    ++ + ++L+  k+l+P++v++ve+e+    ++e F+ rf+++l++ysal+dslea++p +s++r+ vEr++lg+
  OIT35178 322 LKLVRGEAIIINCMLHLPHFTYRA---SDSIASFLSGSKTLNPRLVTLVEEEVRPvgEEEGFVGRFMDTLHHYSALYDSLEAGFPLQSRARALVERVFLGP 419
               *****************9998443...334569*******************998767889**************************************** PP

      GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
               +i+  +a   +   e+++   +W e+l+++G+++ ++s  + +qaklll  ++ dgyrvee   + lvlgWk+r+L+s+S W+
  OIT35178 420 RITGSLARIYRTWGEDER--CSWGEWLSAVGYRESNISFANHCQAKLLLGLFN-DGYRVEEIgTNKLVLGWKSRRLLSASIWT 499
               ********9998554444..78*******************************.******9768999***************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    
MATMMVDDTI PDFDYYGGLT TPTTTTTTTT TTTTSSSDDD HDHGCTWNDW SPVVDWDAFS  60
GGDNFQDLIE SMIEGNNSSG GLNMNIPKST TFYNSEDSVL MEESEESNNN QSEDVNGLKL  120
VHLLMAAAEA LTGVNKSREL ARVILVRLKE LASPNGSTNM ERLAAHFTDA LQALLDGAAS  180
GSLPKSMFSP NYKDEQQQGD VLAAFQLLQD ISPFIKFGHF TANQAILEAV AHDRRVHIVD  240
YDIMEGIQWA SLMQALVSRK DGPPTPHLRI TALSRSGSGR RSFGTVQETG RRLTAFAASS  300
GQPFSFHHCR LDTDETFKPS ALKLVRGEAI IINCMLHLPH FTYRASDSIA SFLSGSKTLN  360
PRLVTLVEEE VRPVGEEEGF VGRFMDTLHH YSALYDSLEA GFPLQSRARA LVERVFLGPR  420
ITGSLARIYR TWGEDERCSW GEWLSAVGYR ESNISFANHC QAKLLLGLFN DGYRVEEIGT  480
NKLVLGWKSR RLLSASIWTT PDSDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-147GRAS family protein