PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT35131
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 841aa    MW: 92497.9 Da    PI: 5.9417
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT35131genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.5e-191977357
              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
              k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OIT35131 19 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77
              5679*****************************************************97 PP
2START178.63.6e-561643722205
               HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTT CS
     START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqa 100
               laee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v s+g  g+++l +++l+a
  OIT35131 164 LAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHSCSGVASRACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVMSTGsgGTIELLYMQLYA 263
               7899******************************************************.8888888888******************************** PP

               XX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHH CS
     START 101 lsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwv 197
               +++l+p Rdf+  Ry+  +++g++v++++S++++q+ p+    +++vRaellpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s+++  ++t++
  OIT35131 264 PTTLAPaRDFWLMRYTSVMEDGSLVVCERSLNNTQNGPSmppVQNFVRAELLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLSQRTTM 364
               *************************************9988899********************************************************* PP

               HHTXXXXX CS
     START 198 atlqrqce 205
               a+l+++++
  OIT35131 365 AALRHLRQ 372
               ***99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    
MMAVTSACKD SKMGMDNGKY VRYTPEQVEA LERLYHECPK PSSLRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE SSRLQAVNRK LTAMNKLLME ENDRLQKQVS QLVYENSFFR  120
QQTQTAALTT TDNNSCESVV TSGQQNLAAQ RPPRDASPAG LLSLAEETLT EFLSKATGTA  180
VEWVQMPGMK PGPDSIGIIA ISHSCSGVAS RACGLVGLEP TRVAEILKDR PSWFRDCRAV  240
DVLNVMSTGS GGTIELLYMQ LYAPTTLAPA RDFWLMRYTS VMEDGSLVVC ERSLNNTQNG  300
PSMPPVQNFV RAELLPSGYL IRPCEGGGSI IHIVDHMDLE PWSVPEVLRP LYESSTVLSQ  360
RTTMAALRHL RQISQEISHP TVTGWGRRPA ALRALGQRLS KGFNEAVNGF TDEGWSMLES  420
DGIDDVTLLV NSSPSKLMGA NISYANGFPS MSSAVLCAKA SMLLQNVPPA ILLRFLREHR  480
SEWADSGIDA YSAAAVKAGP CSIPVTRTGS FGGQIILPLA HTIEHEEFME VIRLESIGHY  540
QDDMIMPGDI FLLQLCSGVD ENAVGTCAEL VFAPIDASFA DDAPLLPSGF RIIPLDSKAD  600
ASSPNRTLDL ASTLEVGPAG SRPNGDYSKN SGSTKSVMTI AFQFAFEIHL QENIAAMARQ  660
YVRSIISSVQ RVALALSPSR LGSLPGLRSP PGTPEAQTLA RWVCQSYRFF LGVELLKSVS  720
GGSESILKEI WHHSDALMCC SLKALPVFTF ANEAGLDMLE TTLVSLQDIT LEKIFDDNGR  780
KALFSELPQI MQQGFACLQG GICLSSMGRP ISYERAVAWK VLNEEEDPHC ICFMFINWSF  840
V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein