PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIT34958

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GATA

Protein Properties

Length: 260aa MW: 29284.9 Da PI: 7.7703

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT34958	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	60.9	1.6e-19	192	226	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l OIT34958 192 CQHCGVDKTPQWRAGPMGPKTLCNACGVRYKSGRL 226 *******************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MNMVEALDST TCFMVDDDIL NFSLDEEKHP SISSSSSFSS LDSSTNVSFL PDDHSRSFSE 60 SVEEELEWLS NKDAFPAVEF DIFSENVPNI IFDHHSPVSV LENGSSISTN NNSCNINDKE 120 NAFMIGCGSL QVPVNYPVRA RGKRRRRISF ADLTNEHCVW GRKLKIKNNK QEWELLSLPM 180 TTAKRASIGR RCQHCGVDKT PQWRAGPMGP KTLCNACGVR YKSGRLLPEY RPANSPTFSA 240 NLHSNSHRKV LEMRKQRIGI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	148	KRRRRI
2	143	167	KRRRRISFADLTNEHCVWGRKLKIK
3	144	165	RRRRISFADLTNEHCVWGRKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24050.1	4e-42	GATA family protein

Link Out ? help Back to Top
Ensembl	OIT34958