PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT34905
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 532aa    MW: 60084.5 Da    PI: 4.8048
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT34905genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3421e-1041505251374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
               lv+lLl+cAeav  +d++l ++lL+++   ++p gd++qR+  +f+ +L++rl+   + ++  ++l   + + ++ +e+  a++ +++++P++ f++++aN
  OIT34905 150 LVHLLLACAEAVGCRDTQLSDSLLTQIWPAVTPFGDSLQRVSYCFALGLQSRLMLlqHRNNAGATLIQDQLAASSREEKREAYHWLNQITPYMAFGFMAAN 250
               68**************************************************98732445555666666777777899999******************** PP

      GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egpp.slRiTgvgspesgskeelee.tgerLakfAe..elgvpfefnvlvak.rledleleeL 194
                aI +a  g+er+HiiD+++ + +QW +L+++L+++p ++pp ++RiTg+ + +++   ele  +++ + ++A+  + ++++ef+v+ ++ + + ++ e+L
  OIT34905 251 DAICKASRGKERLHIIDLGMLHIFQWQSLIRTLTAQPdSPPPrQVRITGILEDTHD-FMELELgLKSLMDEVAAtsSGNIRLEFQVIKETvSASLFTREKL 350
               *************************************5444589********6655.4444431555566666511569*******8554588999***** PP

      GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
               +v++gEal+Vn+v+qlh+ ++es  + +   ++L+++k+l P +v+vveq+a+hn++ Fl rfle+l+yysa+fdslea+lpr+s +rik+E+   ++ei+
  OIT34905 351 DVREGEALIVNSVMQLHNYVKESRGSLK---TILQAIKKLGPSLVTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLEANLPRDSTTRIKIEKCHYAEEIR 448
               ********************87777666...9********************************************************************* PP

      GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
               n+va eg++r+erhe++ +Wr++l++aGF+ v l+   ++qa+++l+ ++sdgy++ +e+g+l+lgWk+rp++++SaW+
  OIT34905 449 NIVAYEGSNRIERHERADQWRRQLGRAGFQVVGLK--CMSQAQMMLSVYGSDGYTLASEKGCLLLGWKGRPIMFASAWE 525
               ********************************995..89***************************************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    
MHEMNSDWAL SLQSHNQDFA IRQFCAAARM NDQQQQQHSQ NSISELYTYT STPDHSASSQ  60
EEQEFVDSFF NVDSYDKDPL DHQVNLDNEE FGDFTSMILN EYSYENPSML TDEEPRYTVL  120
EASSSSDDLI GAETISHDIV EAEVDQGLQL VHLLLACAEA VGCRDTQLSD SLLTQIWPAV  180
TPFGDSLQRV SYCFALGLQS RLMLLQHRNN AGATLIQDQL AASSREEKRE AYHWLNQITP  240
YMAFGFMAAN DAICKASRGK ERLHIIDLGM LHIFQWQSLI RTLTAQPDSP PPRQVRITGI  300
LEDTHDFMEL ELGLKSLMDE VAATSSGNIR LEFQVIKETV SASLFTREKL DVREGEALIV  360
NSVMQLHNYV KESRGSLKTI LQAIKKLGPS LVTVVEQDAN HNGPFFLGRF LESLHYYSAI  420
FDSLEANLPR DSTTRIKIEK CHYAEEIRNI VAYEGSNRIE RHERADQWRR QLGRAGFQVV  480
GLKCMSQAQM MLSVYGSDGY TLASEKGCLL LGWKGRPIMF ASAWEVHNAA SS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-76GRAS family protein