PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT34654

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 305aa MW: 34645.5 Da PI: 6.2578

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT34654	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.8	7.8e-18	93	145	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe+ +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k OIT34654 93 KKRLNLEQVKALERSFEMANKLEPERKIQLARALGLQPRQIAIWFQNRRARWK 145 4568889*********************************************9 PP
2	HD-ZIP_I/II	131.2	3.9e-42	91	183	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekk+rl+ eqvk+LE+sFe+ +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlE+dye Lkr+ydalk++n++L++++++L++el++ OIT34654 91 EKKKRLNLEQVKALERSFEMANKLEPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLERDYEILKRQYDALKSDNDALKTQNKNLHSELQS 183 69***************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence
MLSGTTGIMA FVPSTPQTSI KFQDNHIPST SPKVFPSPCN IPHQDFIGVS SMLMRRSMSF 60 SGVERCDNHQ DLRVDDNEMS DDDGSSQLLG EKKKRLNLEQ VKALERSFEM ANKLEPERKI 120 QLARALGLQP RQIAIWFQNR RARWKTKQLE RDYEILKRQY DALKSDNDAL KTQNKNLHSE 180 LQSLTLRNRE SGGGGTQMIN LNKENEGSWS NGSDDNNSID VNLGTTTTTR TSSGDSPFYS 240 KNNVFPESSP IPLAQLFHQS SSRSDLQCHK IDPTVPDDQG FCNMFVTPVD DQTNFWPWPE 300 QQQFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	148	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-61	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OIT34654