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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIT34592 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 248aa MW: 28157.3 Da PI: 8.2653 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 15.8 | 3.9e-05 | 89 | 111 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C++C k F+++ L H++ H
OIT34592 89 YECQYCFKNFPTSQALGGHQNAH 111
99******************988 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 248 aa Download sequence |
MDKTEREALE FMNVESFSQL TPFIRPPPPP PPVKEKPIRL FGKEFGGGSN ATTTTDMSES 60 IDSNPFHDEP ETNTVNPANY AYKESQRKYE CQYCFKNFPT SQALGGHQNA HKRERQDAKR 120 AHLQSALAHG KIILSIYGIM NHHRLGEPAT PSTTRHSTWN NINNSTRFYG NHHVNNVISP 180 YSQTPINRNP LAFWRIPSAV HQNSSSNLGF PNDDLKPFPM VKSPNYDSRF EYEPKGGVQD 240 HLSLDLHL |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT2G41940.1 | 8e-34 | C2H2 family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OIT34592 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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