PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT34505

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 311aa MW: 35738.7 Da PI: 5.5333

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT34505	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.1	2e-13	8	53	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEde l + vk++G+++W++I ++ + Rt+k+c++rw + OIT34505 8 KGPWKAEEDEVLRKHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 53 79***********************8887799********87 PP
2	Myb_DNA-binding	44.3	4e-14	64	103	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++++eE+ +++ +q+G++ W++Ia +++ gRt++++k++w OIT34505 64 KFSAEEERTVIELQAQFGNK-WARIATYLP-GRTDNDVKNFW 103 79****************.*****.********* PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MSDSMIKKGP WKAEEDEVLR KHVKKYGPRD WSSIRSKGLL QRTGKSCRLR WVNKLRPNLK 60 NGVKFSAEEE RTVIELQAQF GNKWARIATY LPGRTDNDVK NFWSSRQKKL ARIMRTSVPQ 120 PSKPQKSNNR EPPTLQKLPS VEGPKLSSLE EERSLSMSQY CPSSYMNNSD TINMVQWPEL 180 VNSTSLIFEP DPLQPEFIPN EKGTWFGSQI PLPFPEIPLQ TDFLHPLEDQ ILPMKLEESD 240 FLDFFEQLSA SDIGNVQVPF VPASCSGPER STEIITVKRE IDVPLTPDSF IDDFPMDMFD 300 HIDPLPSPFN W

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	1e-69	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT34505