PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT34441

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C3H

Protein Properties

Length: 492aa MW: 51627.1 Da PI: 8.0102

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT34441	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.1	2.6e-12	49	73	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C yG+rC+F+H+p OIT34441 49 EADCIYYLRTGFCGYGSRCRFNHPP 73 689********************97 PP
2	zf-CCCH	35.4	1.8e-11	100	124	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G +Ck++H++ OIT34441 100 QPVCQYYMRTGMCKFGTSCKYHHPR 124 689********************96 PP
3	zf-CCCH	35.9	1.2e-11	145	170	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C f+++tG+Ck+G +CkF+H++ OIT34441 145 GEKECLFYMKTGQCKFGITCKFHHPQ 170 7899********************97 PP
4	zf-CCCH	35.8	1.4e-11	315	341	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++++G Ck+G++C+++H+p OIT34441 315 PGQPECQYYMKYGDCKFGSSCRYHHPP 341 5789*********************97 PP
5	zf-CCCH	35.3	1.9e-11	363	387	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C++++++G Ck+G++CkF H++ OIT34441 363 APICSHYSQNGVCKFGPSCKFDHPM 387 589********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MERYSGTQAM EGAPVSEWTS PGGDTGLEEA MWQLSVGSGP ESYPERPNEA DCIYYLRTGF 60 CGYGSRCRFN HPPDCNLVMG AARAIGGGGG EGEYPERVGQ PVCQYYMRTG MCKFGTSCKY 120 HHPRQGGVSP ALMTHNIYGY PLRPGEKECL FYMKTGQCKF GITCKFHHPQ PAGVQVPASA 180 ARPGAFPLPA AVLPPATYPA VQSPSVQSAQ QYGVVASNWP VVRPTLLPGS YLPGTYGPLL 240 FPPGMVPVPG WTPYPASASQ VPSLTTQPAA GAGPVYGLTQ LSASAPAYMG PYTSLTASIG 300 PSGSIQKEHA FPERPGQPEC QYYMKYGDCK FGSSCRYHHP PEWSGPKSGF ILSAMGLPLR 360 PGAPICSHYS QNGVCKFGPS CKFDHPMGIS YSPSASSLVD MPVAPYPVGS SVGTLAPSSS 420 SSDLKPELVS GSTKDAFSTQ KSSMSTSSGS VGSMFSKGGP ISHSGVQQSI QSSTSSSGSS 480 STGRDGEAQT SS

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MERYSGTQAM EGAPVSEWTS PGGDTGLEEA MWQLSVGSGP ESYPERPNEA DCIYYLRTGF  60
CGYGSRCRFN HPPDCNLVMG AARAIGGGGG EGEYPERVGQ PVCQYYMRTG MCKFGTSCKY  120
HHPRQGGVSP ALMTHNIYGY PLRPGEKECL FYMKTGQCKF GITCKFHHPQ PAGVQVPASA  180
ARPGAFPLPA AVLPPATYPA VQSPSVQSAQ QYGVVASNWP VVRPTLLPGS YLPGTYGPLL  240
FPPGMVPVPG WTPYPASASQ VPSLTTQPAA GAGPVYGLTQ LSASAPAYMG PYTSLTASIG  300
PSGSIQKEHA FPERPGQPEC QYYMKYGDCK FGSSCRYHHP PEWSGPKSGF ILSAMGLPLR  360
PGAPICSHYS QNGVCKFGPS CKFDHPMGIS YSPSASSLVD MPVAPYPVGS SVGTLAPSSS  420
SSDLKPELVS GSTKDAFSTQ KSSMSTSSGS VGSMFSKGGP ISHSGVQQSI QSSTSSSGSS  480
STGRDGEAQT SS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-145	C3H family protein

Link Out ? help Back to Top
Ensembl	OIT34441