PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT34347
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 300aa    MW: 33956.2 Da    PI: 6.8838
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT34347genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.9e-14114161355
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               + h  +Er+RR+r+ ++f  L  l+P++     kKl+Ka++L  A++YIk+L+
  OIT34347 114 QDHVVAERKRRERLTQRFIALSALVPNL-----KKLDKASVLGDAIKYIKQLE 161
               56999***********************.....9*****************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MDMSSATWWS EMERTNMNDH SFINNNNFQM VTPFIEPFSS CNYGYSNSPS ANTATVAKNH  60
FENLNYTSVK TELTSGTTLN FSSSVSTDSD NFGDSQNLIL TQKKSYNRTS LQAQDHVVAE  120
RKRRERLTQR FIALSALVPN LKKLDKASVL GDAIKYIKQL EEQVKTLEEK AKNICSEESV  180
VAVKRARVLS SHEEYSSSSD EKTSISTDRS FPDIEVRVSD GNFMISIYCK KQNGIIKEIF  240
NEVEKLHLSI ISSSVMPFGY NTTHMTIIAQ MDYKLSMTPN HVANRIRAVM MKEEDTTLTA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120125ERKRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-46bHLH family protein