PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT34230

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 343aa MW: 39138 Da PI: 10.1184

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT34230	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.9	5.1e-40	82	231	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg........... 88 ++k+ r+ski T++g+RdRRvRls+ +a++fFdLq++LGfdk+skt++WL++++k ai el++ s+ + +++ a +ss ++ + + OIT34230 82 PKKRERSSKILTSQGPRDRRVRLSIAIARKFFDLQEMLGFDKPSKTLDWLFTNSKLAIEELPNWSTHQDHDSniaGATKSSCNETK---Dyasecedlaie 179 6899*********************************************************96666644443311111111111...112345555566 PP TCP 89 ......kaaksaakskksqksaasalnlak.esrakarararertrekmrik 133 ++ k ak+kk+ k++a+ l+l esr karararert +km k OIT34230 180 tnegleRKPKRLAKEKKEVKDEATDLALVTrESRVKARARARERTIKKMWSK 231 77777677777779*****99999999***************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MFPASNSTGN PPPHPSLSFH STSPFLGLNG NQILLHHYQN QLSSHHFAKN MTLSANNIIN 60 SPNYHQNHCD NSSRSFPINK KPKKRERSSK ILTSQGPRDR RVRLSIAIAR KFFDLQEMLG 120 FDKPSKTLDW LFTNSKLAIE ELPNWSTHQD HDSNIAGATK SSCNETKDYA SECEDLAIET 180 NEGLERKPKR LAKEKKEVKD EATDLALVTR ESRVKARARA RERTIKKMWS KIETSQRSTS 240 QLIRSSFFLK KDIREMEEQF CKNKLQASQE VAHKEIIQGS GVTKIKTKPS LILGFHPNFS 300 APIESSTTYY GSSSFNTENW GKDTTSELQG RWKQWDSCHS NQI

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MFPASNSTGN PPPHPSLSFH STSPFLGLNG NQILLHHYQN QLSSHHFAKN MTLSANNIIN  60
SPNYHQNHCD NSSRSFPINK KPKKRERSSK ILTSQGPRDR RVRLSIAIAR KFFDLQEMLG  120
FDKPSKTLDW LFTNSKLAIE ELPNWSTHQD HDSNIAGATK SSCNETKDYA SECEDLAIET  180
NEGLERKPKR LAKEKKEVKD EATDLALVTR ESRVKARARA RERTIKKMWS KIETSQRSTS  240
QLIRSSFFLK KDIREMEEQF CKNKLQASQE VAHKEIIQGS GVTKIKTKPS LILGFHPNFS  300
APIESSTTYY GSSSFNTENW GKDTTSELQG RWKQWDSCHS NQI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	8e-25	TCP family protein

Link Out ? help Back to Top
Ensembl	OIT34230