PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT33978

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GATA

Protein Properties

Length: 533aa MW: 59180.2 Da PI: 7.1844

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT33978	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.4	6.1e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ OIT33978 7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41 **************66666*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MGKQGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RAEPDDFEDY 60 RVSRFKNSPV KNKEVKVLKQ KKNHDNPEIG ILPDYNQGFH RKALDEDTSN RSSSGSAVSN 120 SESCAQFGSA EASDLTGPTQ SNIWEGMVPS KKRTCVGRPK QSSVEKLTKD LYTILHEQQC 180 SYWSGSSEED LLLESDKPMV SVEIGHGSVL IRHPSSLGRE EESEASSLSV DNKHHSSNEA 240 YSQLTTPPVH INKGVNSSNL VTERAKKPTG QDQIKRSKDQ LEKLQILGHH NSPLCHIDLK 300 DVLNYEEFIT HLSSDEQQQL LKYLPPVDSF SPPESLRSMF ESSQFEENLS SFQKLLAEGV 360 LDNSLSGVTV EDCRTLKRFT LCYLMKSKWV EQFNLLKDMK CKNSSSSSEV AGGPSVIGTG 420 HSGNMKRPRI GQQPKYSGAN TTMKSPKRVM LKSSYEQKEI MENDSSCFSP RSLFALPSEN 480 SFRFANESSD QDLLLDVPSN SSFPQAELLL PTASFAAQAS TSSSSVYPQL LRP

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MGKQGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RAEPDDFEDY  60
RVSRFKNSPV KNKEVKVLKQ KKNHDNPEIG ILPDYNQGFH RKALDEDTSN RSSSGSAVSN  120
SESCAQFGSA EASDLTGPTQ SNIWEGMVPS KKRTCVGRPK QSSVEKLTKD LYTILHEQQC  180
SYWSGSSEED LLLESDKPMV SVEIGHGSVL IRHPSSLGRE EESEASSLSV DNKHHSSNEA  240
YSQLTTPPVH INKGVNSSNL VTERAKKPTG QDQIKRSKDQ LEKLQILGHH NSPLCHIDLK  300
DVLNYEEFIT HLSSDEQQQL LKYLPPVDSF SPPESLRSMF ESSQFEENLS SFQKLLAEGV  360
LDNSLSGVTV EDCRTLKRFT LCYLMKSKWV EQFNLLKDMK CKNSSSSSEV AGGPSVIGTG  420
HSGNMKRPRI GQQPKYSGAN TTMKSPKRVM LKSSYEQKEI MENDSSCFSP RSLFALPSEN  480
SFRFANESSD QDLLLDVPSN SSFPQAELLL PTASFAAQAS TSSSSVYPQL LRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-136	GATA family protein

Link Out ? help Back to Top
Ensembl	OIT33978