PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OIT33901

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

E2F/DP

Protein Properties

Length: 373aa MW: 41678.1 Da PI: 9.4105

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT33901	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	76.6	2.4e-24	20	85	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rkeksL+ll+++flkl+ ++ + + l+++a++L v +rRRiYDi+N+Le+++++++k+kn+++w+g OIT33901 20 RKEKSLGLLCSNFLKLCDREGVDSIGLDNAADQL---GV--ERRRIYDIVNILESVGVLSRKAKNQYKWNG 85 79***************999********.....****************************98 PP
2	E2F_TDP	72.5	4.8e-23	142	221	1	70
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwk 70 rkeksL +l+q+f+kl+++s+ + ++l+++a++L+ + +k+k RR+YDi+NV+ ++nliek + k++++w+ OIT33901 142 RKEKSLMILAQNFVKLFHCSDVDLISLDKAASALLGDmhdpmAMKTKTRRLYDIANVFVSMNLIEKirspdNGKPAFKWI 221 79*****************************************************************9999****7 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MSSSVNPEEA QWKNPNIYSR KEKSLGLLCS NFLKLCDREG VDSIGLDNAA DQLGVERRRI 60 YDIVNILESV GVLSRKAKNQ YKWNGFSAIP KAVDLLKKEG LKDQSAVSST SHSVANVIAC 120 NHSDLKEKGQ DKTSGSHKID NRKEKSLMIL AQNFVKLFHC SDVDLISLDK AASALLGDMH 180 DPMAMKTKTR RLYDIANVFV SMNLIEKIRS PDNGKPAFKW IAWKENPRTG SPAASKSDDS 240 KRRTFGAEIT NTTSKRCRAD SSSDLVSNGQ VKRLKVAKDD ELKDKNQEMS TERLNGHGTM 300 EFVFGPFGPA SLPKAGVSGK ENLKQTQNWE DLASTYRPQY QNKAASELFA HYVEAWESWQ 360 VEAANELHKQ HLN

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MSSSVNPEEA QWKNPNIYSR KEKSLGLLCS NFLKLCDREG VDSIGLDNAA DQLGVERRRI  60
YDIVNILESV GVLSRKAKNQ YKWNGFSAIP KAVDLLKKEG LKDQSAVSST SHSVANVIAC  120
NHSDLKEKGQ DKTSGSHKID NRKEKSLMIL AQNFVKLFHC SDVDLISLDK AASALLGDMH  180
DPMAMKTKTR RLYDIANVFV SMNLIEKIRS PDNGKPAFKW IAWKENPRTG SPAASKSDDS  240
KRRTFGAEIT NTTSKRCRAD SSSDLVSNGQ VKRLKVAKDD ELKDKNQEMS TERLNGHGTM  300
EFVFGPFGPA SLPKAGVSGK ENLKQTQNWE DLASTYRPQY QNKAASELFA HYVEAWESWQ  360
VEAANELHKQ HLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.2	1e-100	E2F/DP family protein

Link Out ? help Back to Top
Ensembl	OIT33901