PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT33885

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 486aa MW: 53733.9 Da PI: 6.4409

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT33885	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.8	9.2e-14	298	341	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+ri+++++ Lr l+P+ + K++K++iL A++YI++Lq OIT33885 298 VTERKRRNRIKDGLFALRALVPNiS------KMDKVAILGDAIDYINELQ 341 57*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence
MERALEWLRP LVDSNNWEYC VVWKLGDDPS RFIEWIGCCC SGAKGVDVNV KKENGGHLTF 60 TTLCRDGQIQ HPIRTKACEA LAHFPLSISL YSGIQGDVVT SNEPKWINHT EVSNSNLSHE 120 LKGTLVLIPV AGGLVELYNS KLIYKDQKTI DFIINRFKLG SEKGSSSSAK KEDQALDSFP 180 FEKLSFCAPP LHYTSAPLIS QVSESSANPS IQGSPTGSIP SNELTLCHST SDHLSRNIPL 240 SQSSDGHFEH TELQCSGNLS RMEGAVFPWN QENYIIAGDV YPMGKKKQRG PYQSKNLVTE 300 RKRRNRIKDG LFALRALVPN ISKMDKVAIL GDAIDYINEL QEKVKLYQAE LNEIAAGVSN 360 NESSEVVLSD VSEMSKVTGP ANEKTQISLN TTKRTRMEGQ VEVNQIGARQ FLLKVFGSHK 420 PGGFTQLLEA MNSLGLEVVN TNFTTSGEEM LSIFIARPNE DRVVEAQQLR SSLIELITFC 480 GAIYSA

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence

MERALEWLRP LVDSNNWEYC VVWKLGDDPS RFIEWIGCCC SGAKGVDVNV KKENGGHLTF  60
TTLCRDGQIQ HPIRTKACEA LAHFPLSISL YSGIQGDVVT SNEPKWINHT EVSNSNLSHE  120
LKGTLVLIPV AGGLVELYNS KLIYKDQKTI DFIINRFKLG SEKGSSSSAK KEDQALDSFP  180
FEKLSFCAPP LHYTSAPLIS QVSESSANPS IQGSPTGSIP SNELTLCHST SDHLSRNIPL  240
SQSSDGHFEH TELQCSGNLS RMEGAVFPWN QENYIIAGDV YPMGKKKQRG PYQSKNLVTE  300
RKRRNRIKDG LFALRALVPN ISKMDKVAIL GDAIDYINEL QEKVKLYQAE LNEIAAGVSN  360
NESSEVVLSD VSEMSKVTGP ANEKTQISLN TTKRTRMEGQ VEVNQIGARQ FLLKVFGSHK  420
PGGFTQLLEA MNSLGLEVVN TNFTTSGEEM LSIFIARPNE DRVVEAQQLR SSLIELITFC  480
GAIYSA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	285	304	KKKQRGPYQSKNLVTERKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	4e-76	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT33885